DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2022259

Gene

Tulp4

Synonyms

Description

tubby like protein 4

Locus

NM_001103181 UCSC: chr17:6106830-6240637(+) OLP: chr17:6106830-6240637(+)
NM_054040 UCSC: chr17:6138148-6240637(+) OLP: chr17:6138148-6240637(+)

DB links

Entrez 68842
MGI 1916092
Ensembl ENSMUSG00000034377
Vega OTTMUSG00000024073

Feature

protein-coding

GO_BP

1 Terms

GO_MF

GO_CC

1 Terms

KEGG

Log10 (FPKM+1)

1.213

SPR

1.052

Oo

1.346

1C

1.148

2C

0.93

4C

0.55

ESC

1.382

MEF

1.382

p1C

0.974

p4C

0.615

iPSC

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2022259 (v2.0)	Tulp4	NM_001103181,NM_054040	68842	15.3176	10.2777	21.1635	13.0694	7.50996	2.54978	23.0904	23.1047	8.42596	3.11879

SPR_Histone_Erkek_5KaroundTSS

Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)

0.072

H3.3
Rep.1

0.07

H3.3
Rep.2

4.651

H3K4me3
Rep.1

3.902

H3K4me3
Rep.2

0.446

H3K27me3
Rep.1

0.16

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2022259 (v2.0)	Tulp4	68842	654/436	0.072	496/436	0.0697	927/436	4.6513	2605/436	3.9024	143/436	0.4458	738/436	0.1596

SPR_Histone_Erkek_2KaroundTSS

Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)

0.377

H3.3
Rep.1

0.135

H3.3
Rep.2

5.515

H3K4me3
Rep.1

4.668

H3K4me3
Rep.2

-0.049

H3K27me3
Rep.1

-0.403

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2022259 (v2.0)	Tulp4	68842	360/194	0.3774	231/194	0.135	776/194	5.5154	1984/194	4.6677	45/194	-0.0492	222/194	-0.4025

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2022259 (v2.0)	Tulp4	68842	60.7865	125	48.63

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2022259 (v2.0)	Tulp4	68842	17.5931	80	21.99

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021628 (v1.0)	3817	C0901F11-3	Mm.28251	Tulp4	68842		NAP104486-1		TC820401	Q922C2		3.6112	3.7762	3.1245	3.1633	2.7202	2.963	2.977
0021628 (v1.0)	6711	H3032E06-3	Mm.28251	Tulp4	68842	U040227	NAP094037-001		TC820404,TC820401	Q922C2	U,F,2	4.0026	4.3898	4.7324	4.5763	3.9792	4.3606	4.0451
0021628 (v1.0)	12083	H3132F10-5		Tulp4	68842	U040227	NAP094037-001		TC820405,TC820401	Q922C2	U,F,2	2.8828	2.8601	3.0271	2.8633	3.4785	3.0341	3.2003

N/A

N/A

N/A