DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2023046
GeneVps29
SynonymsPEP11
Descriptionvacuolar protein sorting 29 (S. pombe)
LocusNM_019780 UCSC: chr5:122804422-122813296(+) OLP: chr5:122804422-122813296(+)
DB links


Entrez 56433
MGI 1928344
Ensembl ENSMUSG00000029462
Vega OTTMUSG00000026702
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.759
SPR
1.733
Oo
1.674
1C
1.089
2C
0.947
4C
1.811
ESC
1.88
MEF
1.694
p1C
1.081
p4C
1.855
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023046
(v2.0)		Vps29NM_01978056433
56.427853.075446.253911.26327.8472663.701774.901848.462911.044770.6779
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.349
H3.3
Rep.1
0.03
H3.3
Rep.2
2.093
H3K4me3
Rep.1
0.783
H3K4me3
Rep.2
-0.98
H3K27me3
Rep.1
-0.531
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2023046
(v2.0)		Vps2956433
769/4230.3488468/4230.0296152/4232.0931290/4230.783151/423-0.9804443/423-0.5312
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.691
H3.3
Rep.1
0.23
H3.3
Rep.2
3.322
H3K4me3
Rep.1
2.036
H3K4me3
Rep.2
-1.023
H3K27me3
Rep.1
-0.694
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2023046
(v2.0)		Vps2956433
381/1650.6912210/1650.2304145/1653.3222272/1652.035919/165-1.0226154/165-0.6935
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2023046
(v2.0)		Vps2956433
79.614514953.43
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2023046
(v2.0)		Vps2956433
25.26629227.46
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022396
(v1.0)		11809H3123D08-3Mm.28356Vps2956433
U006136NAP007243-001Vps29;TC909455,TC909454,TC909453Q9QZ88U,F3.07763.36492.97542.90582.90243.18293.3104
MOE430 N/A
Agilent44K N/A
Proteome N/A