DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2023228
GeneWhsc1
SynonymsWhsc1l
DescriptionWolf-Hirschhorn syndrome candidate 1 (human)
LocusNM_001177884 UCSC: chr5:34185761-34219932(+) OLP: chr5:34185761-34219932(+)
NM_175231 UCSC: chr5:34185761-34240615(+) OLP: chr5:34185761-34240615(+)
NM_001081102 UCSC: chr5:34185761-34240615(+) OLP: chr5:34185761-34240615(+)
DB links


Entrez 107823
MGI 1276574
Ensembl ENSMUSG00000057406
Vega OTTMUSG00000025044
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
Log10 (FPKM+1)
0.982
SPR
1.305
Oo
1.504
1C
1.26
2C
0.891
4C
0.927
ESC
1.468
MEF
1.354
p1C
0.951
p4C
0.938
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023228
(v2.0)		Whsc1NM_001081102,NM_001177884,NM_175231107823
8.5864319.18530.900217.19476.78057.4459428.355121.60937.933697.66585
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.048
H3.3
Rep.1
0.032
H3.3
Rep.2
-2.392
H3K4me3
Rep.1
-2.402
H3K4me3
Rep.2
-1.846
H3K27me3
Rep.1
-2.373
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2023228
(v2.0)		Whsc1107823
546/3700.0484410/3700.03185/370-2.391927/370-2.402524/370-1.8459107/370-2.3729
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.002
H3.3
Rep.1
-0.327
H3.3
Rep.2
-2.766
H3K4me3
Rep.1
-2.249
H3K4me3
Rep.2
-2.653
H3K27me3
Rep.1
-2.423
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2023228
(v2.0)		Whsc1107823
218/153-0.002132/153-0.32681/153-2.766412/153-2.24925/153-2.653442/153-2.4227
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2023228
(v2.0)		Whsc1107823
45.7014993.27
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2023228
(v2.0)		Whsc1107823
23.39232593.57
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A