DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2023328
GeneXrcc4
Synonyms
DescriptionX-ray repair complementing defective repair in Chinese hamster cells 4
LocusNM_028012 UCSC: chr13:89988519-90229213(-) OLP: chr13:89988519-90229213(-)
DB links


Entrez 108138
MGI 1333799
Ensembl ENSMUSG00000021615
Vega OTTMUSG00000035049
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.673
SPR
0.955
Oo
1.25
1C
1.048
2C
1.016
4C
0.82
ESC
0.768
MEF
1.009
p1C
1.084
p4C
0.89
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023328
(v2.0)		Xrcc4NM_028012108138
3.709378.0067916.772810.1669.38435.600354.855069.2166811.1446.76104
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.164
H3.3
Rep.1
0.127
H3.3
Rep.2
2.202
H3K4me3
Rep.1
1.255
H3K4me3
Rep.2
-1.232
H3K27me3
Rep.1
-2.107
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2023328
(v2.0)		Xrcc4108138
478/2990.1635354/2990.127117/2992.2023285/2991.255130/299-1.232104/299-2.1069
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.209
H3.3
Rep.1
0.144
H3.3
Rep.2
3.142
H3K4me3
Rep.1
2.246
H3K4me3
Rep.2
-1.266
H3K27me3
Rep.1
-2.424
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2023328
(v2.0)		Xrcc4108138
241/1460.2089175/1460.1442114/1463.1415279/1462.246114/146-1.265740/146-2.4235
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2023328
(v2.0)		Xrcc4108138
34.5138938.78
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2023328
(v2.0)		Xrcc4108138
8.99036114.74
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022677
(v1.0)		1244C0190G07-3Mm.37531Xrcc4108138
U035009NAP004747-002TC806397Q9D6U6U,F3.1233.13713.30763.19263.01833.17893.0317
MOE430 N/A
Agilent44K N/A
Proteome N/A