DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016516
GenePdxdc1
Synonyms
Descriptionpyridoxal-dependent decarboxylase domain containing 1
LocusNM_001039533 UCSC: chr16:13833666-13903238(-) OLP: chr16:13833666-13903238(-)
NM_001291017 UCSC: chr16:13833666-13903238(-) OLP: chr16:13833666-13903238(-)
NM_053181 UCSC: chr16:13835793-13903238(-) OLP: chr16:13835793-13903238(-)
DB links


Entrez 94184
MGI 1920909
Ensembl ENSMUSG00000022680
Vega OTTMUSG00000024509
Featureprotein-coding
GO_BP
  •   1 Terms
GO_MF
  •   24 Terms
      catalytic activity (GO:0003824)
      phosphoenolpyruvate carboxykinase activity (GO:0004611)
      gamma-glutamyl carboxylase activity (GO:0008488)
      3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity (GO:0008694)
      lyase activity (GO:0016829)
      carboxy-lyase activity (GO:0016831)
      2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate decarboxylase activity (GO:0018791)
      bis(4-chlorophenyl)acetate decarboxylase activity (GO:0018792)
      3,5-dibromo-4-hydroxybenzoate decarboxylase activity (GO:0018793)
      2-hydroxyisobutyrate decarboxylase activity (GO:0018794)
      2-hydroxy-2-methyl-1,3-dicarbonate decarboxylase activity (GO:0018795)
      pyridoxal phosphate binding (GO:0030170)
      2-hydroxyisophthalate decarboxylase activity (GO:0034524)
      dimethylmalonate decarboxylase activity (GO:0034782)
      2,4,4-trimethyl-3-oxopentanoate decarboxylase activity (GO:0034853)
      4,4-dimethyl-3-oxopentanoate decarboxylase activity (GO:0034854)
      2,3,6-trihydroxyisonicotinate decarboxylase activity (GO:0034879)
      phenanthrene-4,5-dicarboxylate decarboxylase activity (GO:0034923)
      pyrrole-2-carboxylate decarboxylase activity (GO:0034941)
      terephthalate decarboxylase activity (GO:0034947)
      malonate semialdehyde decarboxylase activity (GO:0034952)
      5-amino-4-imidazole carboxylate lyase activity (GO:0043727)
      2-keto-4-methylthiobutyrate aminotransferase activity (GO:0043728)
      2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity (GO:0051997)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016516
(v2.0)		Pdxdc1NM_001039533,NM_001291017,NM_05318194184
113.43731.943646.184830.441519.317120.57718.230251.536120.008819.2511
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016516
(v2.0)		Pdxdc194184
615/3440.3245447/3440.261207/3442.8252412/3441.584521/344-1.926498/344-2.393
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016516
(v2.0)		Pdxdc194184
335/1640.515190/1640.0955204/1643.82395/1642.58117/164-2.335950/164-2.2788
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016516
(v2.0)		Pdxdc194184
43.240511936.34
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016516
(v2.0)		Pdxdc194184
11.57588613.46
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A