DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016666
GenePhf8
Synonyms
DescriptionPHD finger protein 8
LocusNM_177201 UCSC: chrX:147955215-148060376(+) OLP: chrX:147955215-148060376(+)
NM_001113354 UCSC: chrX:147955215-148068400(+) OLP: chrX:147955215-148068400(+)
DB links


Entrez 320595
MGI 2444341
Ensembl ENSMUSG00000041229
Vega OTTMUSG00000017224
Featureprotein-coding
GO_BP
  •   9 Terms
      G1/S transition of mitotic cell cycle (GO:0000082)
      histone H3-K9 demethylation (GO:0033169)
      histone H4-K20 demethylation (GO:0035574)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase I promoter (GO:0045943)
      oxidation-reduction process (GO:0055114)
      negative regulation of chromatin silencing at rDNA (GO:0061188)
      histone H3-K36 demethylation (GO:0070544)
      histone H3-K27 demethylation (GO:0071557)
GO_MF
  •   10 Terms
      chromatin binding (GO:0003682)
      iron ion binding (GO:0005506)
      zinc ion binding (GO:0008270)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      histone demethylase activity (GO:0032452)
      histone demethylase activity (H3-K9 specific) (GO:0032454)
      methylated histone binding (GO:0035064)
      histone demethylase activity (H4-K20 specific) (GO:0035575)
      histone demethylase activity (H3-K36 specific) (GO:0051864)
      histone demethylase activity (H3-K27 specific) (GO:0071558)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016666
(v2.0)		Phf8NM_001113354,NM_177201320595
14.532130.731552.791222.95357.913123.307775.749651.69959.37623.09205
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016666
(v2.0)		Phf8320595
343/1830.3917239/1830.2676492/1834.93821566/1834.409711/183-1.9054139/183-0.9883
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016666
(v2.0)		Phf8320595
209/950.6194134/950.3765467/955.72821291/955.05912/95-2.98929/95-2.2529
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016666
(v2.0)		Phf8320595
26.645710824.67
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016666
(v2.0)		Phf8320595
10.2529011.39
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A