DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018480
GeneRnf5
Synonyms
Descriptionring finger protein 5
LocusNM_019403 UCSC: chr17:34738044-34740506(-) OLP: chr17:34738044-34740506(-)
DB links


Entrez 54197
MGI 1860076
Ensembl ENSMUSG00000015478
Vega OTTMUSG00000037075
Featureprotein-coding
GO_BP
GO_MF
  •   15 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      protein binding (GO:0005515)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
  •   1 Terms
      Protein processing in endoplasmic reticulum (mmu04141)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018480
(v2.0)		Rnf5NM_01940354197
40.187826.691977.44154.776059.6191351.99924.57377.398910.129555.368
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018480
(v2.0)		Rnf554197
858/5710.0745422/571-0.55131120/5714.5442644/5713.536612/571-3.4096170/571-2.337
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018480
(v2.0)		Rnf554197
272/202-0.0831145/202-0.5909664/2025.23591549/2024.25333/202-3.629953/202-2.4961
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018480
(v2.0)		Rnf554197
102.09424641.5
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018480
(v2.0)		Rnf554197
23.691511221.15
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017952
(v1.0)		5483H3001C04-3Mm.7447Rnf554197
U037716NAP003888-001Rnf5;TC842981,TC842979O35445U,F3.8473.86883.90393.8473.78583.99194.0055
MOE430 N/A
Agilent44K N/A
Proteome N/A