DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018722
GeneRtf1
SynonymsGtl7
DescriptionRtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LocusNM_030112 UCSC: chr2:119500804-119561143(+) OLP: chr2:119500804-119561143(+)
DB links


Entrez 76246
MGI 1309480
Ensembl ENSMUSG00000027304
Vega OTTMUSG00000016508
Featureprotein-coding
GO_BP
  •   12 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-templated (GO:0006351)
      DNA-templated transcription, initiation (GO:0006352)
      regulation of transcription, DNA-templated (GO:0006355)
      Wnt signaling pathway (GO:0016055)
      histone modification (GO:0016570)
      stem cell maintenance (GO:0019827)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      histone H3-K4 trimethylation (GO:0080182)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018722
(v2.0)		Rtf1NM_03011276246
9.9707118.437731.189216.857418.52436.925238.2230633.457214.06717.83866
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018722
(v2.0)		Rtf176246
725/3890.3845542/3890.3615495/3893.90731586/3893.3504143/3890.6087860/3890.5441
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018722
(v2.0)		Rtf176246
383/1410.924254/1410.7289475/1415.23721422/1414.640935/1410.0462150/141-0.5058
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018722
(v2.0)		Rtf176246
27.01269428.74
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018722
(v2.0)		Rtf176246
7.52077210.45
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A