DBTMEE:2018730
| Gene | Rtn4 |
| Synonyms | NgA
NOGO |
| Description | reticulon 4 |
| Locus | NM_194054 UCSC: chr11:29592898-29644414(+) OLP: chr11:29592898-29644414(+)
NM_194053 UCSC: chr11:29592898-29644414(+) OLP: chr11:29592898-29644414(+)
NM_194052 UCSC: chr11:29592898-29644414(+) OLP: chr11:29592898-29644414(+)
NM_194051 UCSC: chr11:29593774-29644414(+) OLP: chr11:29593774-29644414(+)
NM_024226 UCSC: chr11:29618563-29644414(+) OLP: chr11:29618563-29644414(+)
|
| DB links |
Entrez 68585
MGI 1915835
Ensembl ENSMUSG00000020458
Vega OTTMUSG00000005336
|
| Feature | protein-coding |
| GO_BP |
-
 19 Terms
angiogenesis (GO:0001525)
nervous system development (GO:0007399)
axonal fasciculation (GO:0007413)
negative regulation of neuron projection development (GO:0010977)
cerebral cortex radial glia guided migration (GO:0021801)
negative regulation of cell growth (GO:0030308)
regulation of cell migration (GO:0030334)
negative regulation of axon extension (GO:0030517)
positive regulation of dopamine secretion (GO:0033603)
negative regulation of neuron differentiation (GO:0045665)
positive regulation of glial cell differentiation (GO:0045687)
regulation of axon regeneration (GO:0048679)
negative regulation of axonogenesis (GO:0050771)
regulation of sensory perception of pain (GO:0051930)
regulation of nervous system development (GO:0051960)
cardiac epithelial to mesenchymal transition (GO:0060317)
negative regulation of neuron projection regeneration (GO:0070571)
endoplasmic reticulum tubular network organization (GO:0071786)
regulation of branching morphogenesis of a nerve (GO:2000172)
|
| GO_MF |
-
3 Terms
|
| GO_CC |
-
13 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2018730
(v2.0) | Rtn4 | NM_024226,NM_194051,NM_194052,NM_194053,NM_194054 | 68585
| 91.0608 | 6.62873 | 5.62096 | 85.4061 | 176.637 | 48.4429 | 108.878 | 2.87187 | 162.821 | 44.1739 |
|
| SPR_Histone_Erkek_5KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2018730
(v2.0) | Rtn4 | 68585
| 494/309 | 0.1636 | 417/309 | 0.3153 | 3/309 | -2.726 | 54/309 | -1.1705 | 18/309 | -1.9851 | 69/309 | -2.7356 |
|
| SPR_Histone_Erkek_2KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2018730
(v2.0) | Rtn4 | 68585
| 192/103 | 0.3824 | 169/103 | 0.5935 | 1/103 | -2.2461 | 42/103 | 0.0362 | 6/103 | -1.8785 | 31/103 | -2.2768 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2018730
(v2.0) | Rtn4 | 68585
| 25.6361 | 103 | 24.89 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2018730
(v2.0) | Rtn4 | 68585
| 6.9638 | 83 | 8.39 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0018198
(v1.0) | 3741 | C0873D01-3 | | Rtn4 | 68585
| U012413 | NAP034060-1 | Rtn4; | TC901793 | Q99P72 | U,F,2 | 2.2955 | 2.3263 | 1.8573 | 2.2626 | 2.1968 | 2.1944 | 2.1822 |
0018198
(v1.0) | 5540 | H3002D11-3 | Mm.27866 | Rtn4 | 68585
| | NAP017149-001 | | TC838193 | | | 2.0963 | 2.5128 | 2.8137 | 3.3987 | 3.3812 | 3.5279 | 3.3272 |
0018198
(v1.0) | 10266 | H3093E01-3 | Mm.220966 | Rtn4 | 68585
| U012413 | NAP121913-001 | Rtn4; | TC871576,TC801313,TC799586,TC793355,TC793354 | Q99P72 | U,F,2 | 3.3117 | 3.2503 | 3.5344 | 3.7777 | 4.0314 | 4.0162 | 3.972 |
0018198
(v1.0) | 11116 | H3108F05-3 | Mm.132186 | Rtn4 | 68585
| | NAP017149-001 | | TC838191 | | | 2.2929 | 2.3749 | 2.436 | 2.6261 | 2.6389 | 2.8374 | 2.5782 |
0018198
(v1.0) | 20127 | L0523D10-3 | Mm.220966 | Rtn4 | 68585
| U012413 | NAP107139-1 | Rtn4; | TC793354 | Q99P72 | U,F,2 | 3.6885 | 3.9756 | 4.4155 | 4.1109 | 3.5893 | 3.9253 | 3.6042 |
0018198
(v1.0) | 20842 | L0815D02-3 | | Rtn4 | 68585
| U032606 | NAP121912-001 | MGC38936; | | | U,F,2 | 3.5535 | 3.3954 | 3.304 | 3.4817 | 3.6896 | 3.5175 | 3.6587 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
