DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019950
GeneSmurf1
Synonyms
DescriptionSMAD specific E3 ubiquitin protein ligase 1
LocusNM_029438 UCSC: chr5:145637364-145726699(-) OLP: chr5:145637364-145726699(-)
NM_001038627 UCSC: chr5:145637364-145726699(-) OLP: chr5:145637364-145726699(-)
DB links


Entrez 75788
MGI 1923038
Ensembl ENSMUSG00000038780
Vega OTTMUSG00000021547
Featureprotein-coding
GO_BP
  •   13 Terms
      protein polyubiquitination (GO:0000209)
      protein export from nucleus (GO:0006611)
      transforming growth factor beta receptor signaling pathway (GO:0007179)
      protein ubiquitination (GO:0016567)
      cell differentiation (GO:0030154)
      negative regulation of ossification (GO:0030279)
      BMP signaling pathway (GO:0030509)
      negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512)
      ubiquitin-dependent SMAD protein catabolic process (GO:0030579)
      receptor catabolic process (GO:0032801)
      protein localization to cell surface (GO:0034394)
      protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787)
      proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
GO_MF
  •   14 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      I-SMAD binding (GO:0070411)
      R-SMAD binding (GO:0070412)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019950
(v2.0)		Smurf1NM_001038627,NM_02943875788
9.8953126.243735.29329.324225.300965.4939217.930145.83188.46126.08874
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019950
(v2.0)		Smurf175788
636/481-0.1096376/481-0.470396/4811.2551218/4810.1887117/4810.0181659/481-0.1448
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019950
(v2.0)		Smurf175788
282/1800.1342132/180-0.559989/1802.5069202/1801.484747/1800.1179231/180-0.238
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019950
(v2.0)		Smurf175788
68.297314048.78
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019950
(v2.0)		Smurf175788
11.61727914.71
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A