DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0001929

Gene

Abcf1

Synonyms

Abc50
D17Wsu166e
GCN20

Description

ATP-binding cassette, sub-family F (GCN20), member 1

Locus

NM_013854 UCSC: chr17:36093764-36106695(-) OLP: chr17:36093764-36106695(-)

DB links

Entrez 224742
MGI 1351658
Ensembl ENSMUSG00000038762
Vega OTTMUSG00000037427

Feature

protein-coding

GO_BP

2 Terms

GO_MF

6 Terms

GO_CC

6 Terms

KEGG

see DBTMEE:2001807 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0001929 (v1.0)	Abcf1	NM_013854	224742	30.5976	20.4249	97.0231	123.541	26.7845

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0001929 (v1.0)	Abcf1	NM_013854	224742	31.9926	21.1372	22.284

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0001929 (v1.0)	Abcf1	NM_013854	224742	31.228	20.2198	23.4725

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0001929 (v1.0)	Abcf1	NM_013854	224742	32.0112	20.8477	25.7439

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0001929 (v1.0)	Abcf1	NM_013854	224742	89.8283	119.284	95.1287

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0001929 (v1.0)	Abcf1	NM_013854	224742	22.2953	56.2978

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0001929 (v1.0)	Abcf1	NM_013854	224742	6.07404	6.72627

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0001929 (v1.0)	6308	H3022G10-3		LOC224742	224742	U043883	NAP094438-001		TC857997,TC857996	Q9JL47	U,F,2	3.9315	3.8138	4.0739	4.5333	4.536	4.3071	4.4773
0001929 (v1.0)	6599	H3029B04-5		LOC224742	224742	U043883	NAP002303-001		TC857997	Q9JL47	U,F,2	2.7315	2.9249	2.8692	3.0147	2.703	3.009	2.8657

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0001929 (v1.0)	1420157_s_at	Mm.329022	Abcf1	NM_013854.1	224742	226.075	121.95	630.95	978.75	467.4

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0001929 (v1.0)	A_51_P107234	Abcf1	NM_013854	224742	1	1	P	1.307	0.228	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0001929 (v1.0)	Abcf1	224742	1	0	1	1	0	1