DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0003467

Gene

Becn1

Synonyms

Atg6

Description

beclin 1, autophagy related

Locus

NM_019584 UCSC: chr11:101149581-101163581(-) OLP: chr11:101149581-101163581(-)

DB links

Entrez 56208
MGI 1891828
Ensembl ENSMUSG00000035086
Vega OTTMUSG00000002791

Feature

protein-coding

GO_BP

13 Terms

GO_MF

1 Terms

GO_CC

9 Terms

KEGG

1 Terms

see DBTMEE:2003349 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0003467 (v1.0)	Becn1	NM_019584	56208	30.1253	30.0405	35.0272	27.3786	28.0231

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0003467 (v1.0)	Becn1	NM_019584	56208	31.4988	17.9144	32.7748

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0003467 (v1.0)	Becn1	NM_019584	56208	30.7459	29.7389	26.9689

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0003467 (v1.0)	Becn1	NM_019584	56208	31.5171	17.669	29.5785

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0003467 (v1.0)	Becn1	NM_019584	56208	32.4297	26.4352	25.7641

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0003467 (v1.0)	Becn1	NM_019584	56208	25.5413	17.7298

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0003467 (v1.0)	Becn1	NM_019584	56208	33.3809	37.6084

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0003467 (v1.0)	19674	L0289D04-3	Mm.178947	Becn1	56208	U033452	NAP000365-003	Becn1;	TC799368,TC799367,TC799366,TC799365	Q9D9L8	U,F,2	3.5805	3.3718	2.9707	3.2498	2.7107	2.9238	2.8357

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0003467 (v1.0)	1460320_at	Mm.178947	Becn1	NM_019584.3	56208	94.825	178.45	196.75	96.3	145.975
0003467 (v1.0)	1435219_x_at	Mm.178947	Becn1	NM_019584.3	56208	43.675	0	97.1	60.875	70.85
0003467 (v1.0)	1455880_s_at	Mm.178947	Becn1	NM_019584.3	56208	171.825	326.55	362.6	128.2	180.975
0003467 (v1.0)	1439405_x_at	Mm.178947	Becn1	NM_019584.3	56208	1504.07	3385.95	2854.23	1382.5	1756.95
0003467 (v1.0)	1430358_at	Mm.178947	Becn1	NM_019584.3	56208	357.85	427.175	536.7	472.7	339.175

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0003467 (v1.0)	A_51_P489337	Becn1	NM_019584	56208	1	1	P	0.509	0.101	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0003467 (v1.0)	Becn1	56208	1	0	0	1	0	0