DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0003852

Gene

Calm1

Synonyms

Description

calmodulin 1

Locus

NM_009790 UCSC: chr12:101437751-101448016(+) OLP: chr12:101437751-101448016(+)

DB links

Entrez 12313
MGI 88251
Ensembl ENSMUSG00000001175
Vega OTTMUSG00000016979

Feature

protein-coding

GO_BP

4 Terms

GO_MF

9 Terms

GO_CC

3 Terms

KEGG

15 Terms

see DBTMEE:2003741 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0003852 (v1.0)	Calm1	NM_009790	12313	101.98	95.1065	36.3903	18.528	68.4598

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0003852 (v1.0)	Calm1	NM_009790	12313	106.629	55.7155	103.763

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0003852 (v1.0)	Calm1	NM_009790	12313	104.081	94.1515	82.077

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0003852 (v1.0)	Calm1	NM_009790	12313	106.691	54.9524	90.0193

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0003852 (v1.0)	Calm1	NM_009790	12313	33.6918	17.8895	26.324

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0003852 (v1.0)	Calm1	NM_009790	12313	345.815	94.5279

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0003852 (v1.0)	Calm1	NM_009790	12313	100.495	138.904

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0003852 (v1.0)	3283	C0628F09-3	Mm.34246	Calm1	12313	U043305	NAP094874-001	Calm1;	TC924172	Q9D6G4	U,F,2	3.7885	3.7406	3.9473	3.8594	3.9472	4.044	4.4875
0003852 (v1.0)	13000	H3156D12-3	Mm.222925	AI256814	104772	U043305	NAP031828-1	Calm1;	TC924172	Q9D6G4	U,F,2	4.0846	4.0326	4.2127	3.9517	4.6229	4.2479	4.4967

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0003852 (v1.0)	1417365_a_at	Mm.285993	Calm1	NM_009790.4	12313	543.85	547.9	434.425	159.55	705.35
0003852 (v1.0)	1454611_a_at	Mm.285993	Calm1	NM_009790.4	12313	438.1	257.775	463.025	236.725	897.75
0003852 (v1.0)	1455571_x_at	Mm.285993	Calm1	NM_009790.4	12313	858.8	472.475	796.95	322.3	1159.2
0003852 (v1.0)	1433592_at	Mm.285993	Calm1	NM_009790.4	12313	425.725	636.025	543.35	0	654.925

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0003852 (v1.0)	A_51_P465023	Calm1	NM_009790	12313	1	1	P	0.699	0.187	P
0003852 (v1.0)	A_51_P503937	Calm1	NM_009790	12313	1	1	P	0.6	0.148	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0003852 (v1.0)	Calm1	12313	9	11	5	30	42	7