DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0004751

Gene

Ckap5

Synonyms

Description

cytoskeleton associated protein 5

Locus

NM_001165989 UCSC: chr2:91386479-91460822(+) OLP: chr2:91386479-91460822(+)
NM_029437 UCSC: chr2:91386479-91460822(+) OLP: chr2:91386479-91460822(+)

DB links

Entrez 75786
MGI 1923036
Ensembl ENSMUSG00000040549
Vega OTTMUSG00000014251

Feature

protein-coding

GO_BP

6 Terms

GO_MF

2 Terms

GO_CC

5 Terms

KEGG

see DBTMEE:2004670 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	53.0716	49.1144	37.9136	24.4486	23.461

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	55.4912	2.71616	53.5849

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	54.1649	48.6213	30.4165

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	55.5235	2.67896	33.3598

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	35.1021	23.6061	25.9031

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	22.7569	17.8452

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0004751 (v1.0)	Ckap5	NM_001165989,NM_029437	75786	23.6352	28.2971

N/A

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0004751 (v1.0)	1437349_at	Mm.168478	Ckap5	NM_001165989.1,NM_029437.2	75786	281.95	429.375	217.075	171.525	197.9

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0004751 (v1.0)	A_51_P196243	Ckap5	NM_029437	75786	1	1	P	0.423	0.0779	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0004751 (v1.0)	Ckap5	75786	20	36	11	26	52	18