DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0004938

Gene

Cnot4

Synonyms

Not4
Not4h
Not4hp

Description

CCR4-NOT transcription complex, subunit 4

Locus

NM_001164413 UCSC: chr6:34972065-35083737(-) OLP: chr6:34972065-35083737(-)
NM_001164412 UCSC: chr6:34972065-35083737(-) OLP: chr6:34972065-35083737(-)
NM_001164414 UCSC: chr6:34972065-35083737(-) OLP: chr6:34972065-35083737(-)
NM_001164411 UCSC: chr6:34992707-35083737(-) OLP: chr6:34992707-35083737(-)
NM_016877 UCSC: chr6:34992707-35083737(-) OLP: chr6:34992707-35083737(-)

DB links

Entrez 53621
MGI 1859026
Ensembl ENSMUSG00000038784

Feature

protein-coding

GO_BP

3 Terms

GO_MF

7 Terms

GO_CC

2 Terms

KEGG

1 Terms

see DBTMEE:2004865 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	40.4086	43.7272	9.96537	6.58029	7.80026

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	42.2509	3.67286	47.7074

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	41.2411	43.2882	54.6229

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	42.2755	3.62255	59.9085

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	9.22638	6.35353	7.61263

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	127.672	41.2593

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0004938 (v1.0)	Cnot4	NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_016877	53621	4.99856	9.01765

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0004938 (v1.0)	4389	C0932B12-3	Mm.42183	Cnot4	53621	U027158	NAP000732-001	Cnot4;	TC842772	Q9Z1D0	U,F,2	2.7971	3.0469	2.9886	2.9838	2.968	2.9787	2.8924
0004938 (v1.0)	15684	K0225E03-3	Mm.42183	Cnot4	53621	U027158	NAP000732-002	Cnot4;	TC842773,TC842771	Q9Z1D0	U,F,2	3.3718	3.0907	3.0903	2.9764	3.7152	3.2808	3.4691

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0004938 (v1.0)	1420999_at	Mm.214525	Cnot4	NM_016877.4,NM_001164411.1,NM_001164413.1,NM_001164414.1,NM_001164412.1	53621	194.975	263.1	129.3	57.6	56.35
0004938 (v1.0)	1436645_a_at	Mm.214525	Cnot4	NM_016877.4,NM_001164411.1,NM_001164413.1,NM_001164414.1,NM_001164412.1	53621	329.575	310.125	297.8	93.9	67.175
0004938 (v1.0)	1437586_at	Mm.214525	Cnot4	NM_016877.4,NM_001164411.1,NM_001164413.1,NM_001164414.1,NM_001164412.1	53621	199.825	175.6	148.775	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0004938 (v1.0)	A_51_P182055	Cnot4	NM_016877	53621	1	1	P	0.607	0.169	P
0004938 (v1.0)	A_52_P139	Cnot4	NM_016877	53621	1	1	P	0.291	0.0543	P
0004938 (v1.0)	A_52_P681	Cnot4	NM_016877	53621	1	1	P	0.385	0.0664	P

N/A