DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0009851

Gene

H3f3b

Synonyms

H3.3B

Description

H3 histone, family 3B

Locus

NM_008211 UCSC: chr11:115883275-115885818(-) OLP: chr11:115883275-115885818(-)

DB links

Entrez 15081
MGI 1101768
Ensembl ENSMUSG00000016559
Vega OTTMUSG00000003689

Feature

protein-coding

GO_BP

2 Terms

GO_MF

GO_CC

KEGG

1 Terms

see DBTMEE:2009730 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0009851 (v1.0)	H3f3b	NM_008211	15081	367.007	479.029	234.355	491.269	141.63

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0009851 (v1.0)	H3f3b	NM_008211	15081	383.739	92.9603	522.631

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0009851 (v1.0)	H3f3b	NM_008211	15081	374.567	474.219	396.665

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0009851 (v1.0)	H3f3b	NM_008211	15081	383.962	91.687	435.049

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0009851 (v1.0)	H3f3b	NM_008211	15081	216.976	474.339	455.378

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0009851 (v1.0)	H3f3b	NM_008211	15081	243.077	97.4595

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0009851 (v1.0)	H3f3b	NM_008211	15081	710.554	814.411

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0009851 (v1.0)	5947	H3013D08-3	Mm.18516	H3f3b	15081	U033638	NAP001504-001		TC840943,TC840940	Q9D0H3	U,F,2	4.6773	4.5372	3.9707	4.7973	4.134	4.3303	4.3877
0009851 (v1.0)	17387	K0614B01-3	Mm.214774	9430068D06Rik	78941	U033638	NAP001504-001	H3f3b;	TC840940	Q9D0H3	U,F,2	2.6428	2.8985	2.6832	3.0315	3.0896	3.0845	3.1908

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0009851 (v1.0)	1420376_a_at	Mm.315189~Mm.371563	H3f3a~H3f3b	NM_008210.4~NM_008211.3	15078 15081	2066.93	3860.23	2478.35	1366.78	2282.3
0009851 (v1.0)	1455725_a_at	Mm.315189~Mm.371563	H3f3a~H3f3b	NM_008210.4~NM_008211.3	15078 15081	3383.8	5692.95	2850.32	2860.5	2728.2
0009851 (v1.0)	1430357_at	Mm.371563	H3f3b	NM_008211.3	15081	0	0	0	0	251.025

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0009851 (v1.0)	A_51_P164667	H3f3b	NM_008211	15081	1	1	P	1.078	0.59	P
0009851 (v1.0)	A_52_P217875	H3f3b	AK011431	15081	1	1	P	0.978	0.862	P
0009851 (v1.0)	A_52_P61786	H3f3b	NM_008211	15081	1	1	P	0.192	0.0384	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0009851 (v1.0)	H3f3b	15081	1	0	0	2	0	0