DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009925
GeneHdac1
SynonymsHD1
MommeD5
RPD3
Descriptionhistone deacetylase 1
LocusNM_008228 UCSC: chr4:129193348-129219890(-) OLP: chr4:129193348-129219890(-)
DB links


Entrez 433759
MGI 108086
Ensembl ENSMUSG00000028800
Vega OTTMUSG00000009661
Featureprotein-coding
GO_BP
  •   30 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      protein deacetylation (GO:0006476)
      endoderm development (GO:0007492)
      positive regulation of cell proliferation (GO:0008284)
      negative regulation of cell proliferation (GO:0008285)
      epidermal cell differentiation (GO:0009913)
      positive regulation of receptor biosynthetic process (GO:0010870)
      chromatin modification (GO:0016568)
      histone deacetylation (GO:0016575)
      hippocampus development (GO:0021766)
      neuron differentiation (GO:0030182)
      cellular response to oxidative stress (GO:0034599)
      odontogenesis of dentin-containing tooth (GO:0042475)
      embryonic digit morphogenesis (GO:0042733)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of neuron apoptotic process (GO:0043524)
      negative regulation by host of viral transcription (GO:0043922)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of oligodendrocyte differentiation (GO:0048714)
      negative regulation of androgen receptor signaling pathway (GO:0060766)
      hair follicle placode formation (GO:0060789)
      eyelid development in camera-type eye (GO:0061029)
      fungiform papilla formation (GO:0061198)
      histone H3 deacetylation (GO:0070932)
      histone H4 deacetylation (GO:0070933)
      negative regulation of canonical Wnt receptor signaling pathway (GO:0090090)
GO_MF
  •   22 Terms
GO_CC
KEGG
Ver2_FPKM see DBTMEE:2009808 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009925
(v1.0)		Hdac1NM_008228433759
3.661134.62486114.042155.61739.0026
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009925
(v1.0)		Hdac1NM_008228433759
3.8280411.83945.04582
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009925
(v1.0)		Hdac1NM_008228433759
3.736554.578423.02698
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009925
(v1.0)		Hdac1NM_008228433759
3.8302711.67723.31989
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009925
(v1.0)		Hdac1NM_008228433759
105.585150.255156.949
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009925
(v1.0)		Hdac1NM_008228433759
0.98648871.241
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009925
(v1.0)		Hdac1NM_008228433759
0.4143970.946906
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009925
(v1.0)		11397H3114E11-3Hdac115181
U025556NAP093601-001TC814268,TC814267,TC814262,TC814261O09106U,F,22.08312.56572.89893.53653.51833.73093.5246
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009925
(v1.0)		1448246_atMm.391033Hdac1433759
123.7750835.4251660.2721.825
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0009925
(v1.0)		A_51_P507380Hdac1NM_008228433759
11P0.01790.0159P
Proteome N/A