DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010130
GeneHmga1
SynonymsHMG-I(Y)
Hmga1a
Hmga1b
Hmgi
HMGI(Y)
Hmgiy
HMGY
Descriptionhigh mobility group AT-hook 1
LocusNM_001166546 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166541 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166542 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166536 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166543 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166544 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166535 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166545 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166540 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166539 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001039356 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001025427 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_016660 UCSC: chr17:27693549-27700617(+) OLP: chr17:27693549-27700617(+)
NM_001166537 UCSC: chr17:27693549-27700617(+) OLP: chr17:27693549-27700617(+)
DB links


Entrez 15361
MGI 96160
Ensembl ENSMUSG00000046711
Vega OTTMUSG00000028935
Featureprotein-coding
GO_BP
  •   8 Terms
      base-excision repair (GO:0006284)
      spermatogenesis (GO:0007283)
      negative regulation of cell proliferation (GO:0008285)
      senescence-associated heterochromatin focus assembly (GO:0035986)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      oncogene-induced senescence (GO:0090402)
      positive regulation of cellular senescence (GO:2000774)
GO_MF
  •   10 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)
      transcription factor binding (GO:0008134)
      enzyme binding (GO:0019899)
      ligand-dependent nuclear receptor transcription coactivator activity (GO:0030374)
      retinoic acid receptor binding (GO:0042974)
      peroxisome proliferator activated receptor binding (GO:0042975)
      retinoid X receptor binding (GO:0046965)
      5'-deoxyribose-5-phosphate lyase activity (GO:0051575)
GO_CC
KEGG
Ver2_FPKM see DBTMEE:2010013 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
71.277158.56126.288355.94412105.516
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
74.526740.613863.8916
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
72.745557.973294.6007
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
74.5740.0575103.755
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
5.822035.739297.64341
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
39.76395.2663
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010130
(v1.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
30.503137.5859
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010130
(v1.0)		6605H3029B11-3Mm.4438Hmga115361
U017728NAP120086-1Hmga1;TC920000,TC919997,TC799437P17095U,F3.26943.33723.4773.41783.18073.34823.1933
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010130
(v1.0)		1416184_s_atMm.426212~Mm.4438Hmga1-rs1~Hmga1NM_001166476.1,NM_001166477.1~NM_016660.3,NM_001166537.1,NM_001039356.2,NM_001166539.1,NM_001166535.1,NM_001166543.1,NM_001166545.1,NM_001166540.1,NM_001025427.3,NM_001166536.1,NM_001166544.1,NM_001166546.1,NM_001166541.1,NM_001166542.1111241
15361
349.425252.05127.65103.9125.225
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0010130
(v1.0)		A_51_P483118Hmga1NM_01666015361
11P1.4020.183P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010130
(v1.0)		Hmga115361
100400