DBTMEE:0010130
Gene | Hmga1 |
Synonyms | HMG-I(Y) Hmga1a Hmga1b Hmgi HMGI(Y) Hmgiy HMGY |
Description | high mobility group AT-hook 1 |
Locus | NM_001166546 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166541 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166542 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166536 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166543 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166544 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166535 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166545 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166540 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001166539 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001039356 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_001025427 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+) NM_016660 UCSC: chr17:27693549-27700617(+) OLP: chr17:27693549-27700617(+) NM_001166537 UCSC: chr17:27693549-27700617(+) OLP: chr17:27693549-27700617(+)
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DB links |

Entrez 15361 MGI 96160 Ensembl ENSMUSG00000046711 Vega OTTMUSG00000028935
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Feature | protein-coding |
GO_BP |
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 8 Terms
base-excision repair (GO:0006284)
spermatogenesis (GO:0007283)
negative regulation of cell proliferation (GO:0008285)
senescence-associated heterochromatin focus assembly (GO:0035986)
negative regulation of transcription, DNA-dependent (GO:0045892)
positive regulation of transcription, DNA-dependent (GO:0045893)
oncogene-induced senescence (GO:0090402)
positive regulation of cellular senescence (GO:2000774)
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GO_MF |
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 10 Terms
RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
sequence-specific DNA binding transcription factor activity (GO:0003700)
DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)
transcription factor binding (GO:0008134)
enzyme binding (GO:0019899)
ligand-dependent nuclear receptor transcription coactivator activity (GO:0030374)
retinoic acid receptor binding (GO:0042974)
peroxisome proliferator activated receptor binding (GO:0042975)
retinoid X receptor binding (GO:0046965)
5'-deoxyribose-5-phosphate lyase activity (GO:0051575)
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GO_CC |
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 2 Terms
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KEGG | |
Ver2_FPKM |
see DBTMEE:2010013 (v2.0)
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SPR_Histone_Erkek_5KaroundTSS |
N/A |
SPR_Histone_Erkek_2KaroundTSS |
N/A |
SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
SOLiD_OocyteTo4C_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 71.2771 | 58.5612 | 6.28835 | 5.94412 | 105.516 | |
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SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 74.5267 | 40.6138 | 63.8916 |
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SOLiD_Partheno1C_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 72.7455 | 57.9732 | 94.6007 |
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SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 74.57 | 40.0575 | 103.755 |
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SOLiD_Partheno4C_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 5.82203 | 5.73929 | 7.64341 |
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Illumina_Oo_2C_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 39.7639 | 5.2663 |
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SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
0010130 (v1.0) | Hmga1 | NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_016660 | 15361
| 30.5031 | 37.5859 |
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NIA60mer |
DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
0010130 (v1.0) | 6605 | H3029B11-3 | Mm.4438 | Hmga1 | 15361
| U017728 | NAP120086-1 | Hmga1; | TC920000,TC919997,TC799437 | P17095 | U,F | 3.2694 | 3.3372 | 3.477 | 3.4178 | 3.1807 | 3.3482 | 3.1933 |
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MOE430 |
DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
0010130 (v1.0) | 1416184_s_at | Mm.426212~Mm.4438 | Hmga1-rs1~Hmga1 | NM_001166476.1,NM_001166477.1~NM_016660.3,NM_001166537.1,NM_001039356.2,NM_001166539.1,NM_001166535.1,NM_001166543.1,NM_001166545.1,NM_001166540.1,NM_001025427.3,NM_001166536.1,NM_001166544.1,NM_001166546.1,NM_001166541.1,NM_001166542.1 | 111241 15361
| 349.425 | 252.05 | 127.65 | 103.9 | 125.225 |
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Agilent44K |
DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
0010130 (v1.0) | A_51_P483118 | Hmga1 | NM_016660 | 15361
| 1 | 1 | P | 1.402 | 0.183 | P |
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Proteome |
DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
0010130 (v1.0) | Hmga1 | 15361
| 1 | 0 | 0 | 4 | 0 | 0 |
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