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DB status: OK
Last modified: 2024/03/24

Gene Search:

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DBTMEE:0010872

Gene	Jhdm1d
Synonyms	ENSMUSG00000073143 Kdm7a
Description	jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
Locus	NM_001033430 UCSC: chr6:39086619-39156772(-) OLP: chr6:39086619-39156772(-)
DB links	Entrez 338523 MGI 2443388 Ensembl ENSMUSG00000042599 Vega OTTMUSG00000022808
Feature	protein-coding
GO_BP	10 Terms transcription, DNA-dependent (GO:0006351) regulation of transcription, DNA-dependent (GO:0006355) nervous system development (GO:0007399) chromatin modification (GO:0016568) histone H3-K9 demethylation (GO:0033169) histone H4-K20 demethylation (GO:0035574) positive regulation of transcription, DNA-dependent (GO:0045893) oxidation-reduction process (GO:0055114) histone H3-K36 demethylation (GO:0070544) histone H3-K27 demethylation (GO:0071557)
GO_MF	11 Terms iron ion binding (GO:0005506) zinc ion binding (GO:0008270) oxidoreductase activity (GO:0016491) oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706) histone demethylase activity (H3-K9 specific) (GO:0032454) methylated histone residue binding (GO:0035064) histone demethylase activity (H4-K20 specific) (GO:0035575) metal ion binding (GO:0046872) histone demethylase activity (H3-K36 specific) (GO:0051864) histone demethylase activity (H3-K27 specific) (GO:0071558)
GO_CC	2 Terms nucleus (GO:0005634) nucleolus (GO:0005730)
KEGG
Ver2_FPKM	see  (v2.0)
SPR_Histone_Erkek_5KaroundTSS	N/A
SPR_Histone_Erkek_2KaroundTSS	N/A
SPR_Methy_Kobayashi_5KaroundTSS	N/A
SPR_Methy_Kobayashi_2KaroundTSS	N/A
SOLiD_OocyteTo4C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez SPR_FPKM Oo_FPKM 1C_FPKM 2C_FPKM 4C_FPKM MEF_FPKM 0010872 (v1.0) Jhdm1d NM_001033430 338523 47.7574 53.6218 51.8445 28.5344 1.49992
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM SPR_FPKM 1C_FPKM 0010872 (v1.0) Jhdm1d NM_001033430 338523 49.9348 1.20149 58.5025
SOLiD_Partheno1C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM 1C_FPKM p1C_FPKM 0010872 (v1.0) Jhdm1d NM_001033430 338523 48.7413 53.0834 38.009
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM SPR_FPKM p1C_FPKM 0010872 (v1.0) Jhdm1d NM_001033430 338523 49.9638 1.18504 41.687
SOLiD_Partheno4C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez 2C_FPKM 4C_FPKM p4C_FPKM 0010872 (v1.0) Jhdm1d NM_001033430 338523 47.9999 27.5511 25.0683
Illumina_Oo_2C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM 2C_FPKM 0010872 (v1.0) Jhdm1d NM_001033430 338523 25.5431 24.8686
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_1_1 Oo_2_1 0010872 (v1.0) Jhdm1d NM_001033430 338523 7.89409 12.8954
NIA60mer	N/A
MOE430	DBTMEE Probe_ID Unigene Gene RefSeq Entrez Oo 1C 2C 8C Blastocyst 0010872 (v1.0) 1427359_at Mm.293175 Jhdm1d NM_001033430.4 338523 195.4 612.875 549.825 73.275 0 0010872 (v1.0) 1456150_at Mm.293175 Jhdm1d NM_001033430.4 338523 270.45 536.4 439.475 210.5 0 0010872 (v1.0) 1435867_at Mm.293175 Jhdm1d NM_001033430.4 338523 0 0 275.675 539.75 0
Agilent44K	N/A
Proteome	N/A