DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0011055

Gene

Kdm2b

Synonyms

Cxxc2
Fbxl10
Jhdm1b

Description

lysine (K)-specific demethylase 2B

Locus

NM_013910 UCSC: chr5:123320685-123350359(-) OLP: chr5:123320685-123350359(-)
NM_001005866 UCSC: chr5:123320685-123438542(-) OLP: chr5:123320685-123438542(-)
NM_001003953 UCSC: chr5:123320685-123439101(-) OLP: chr5:123320685-123439101(-)

DB links

Entrez 30841
MGI 1354737
Ensembl ENSMUSG00000029475
Vega OTTMUSG00000026750

Feature

protein-coding

GO_BP

19 Terms

GO_MF

10 Terms

GO_CC

1 Terms

KEGG

see DBTMEE:2010962 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	168.57	125.847	29.2756	41.7706	4.79395

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	176.256	2.71772	137.302

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	172.043	124.584	104.219

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	176.358	2.6805	114.304

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	27.1046	40.3312	22.7636

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	76.1688	36.0303

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0011055 (v1.0)	Kdm2b	NM_001003953,NM_001005866,NM_013910	30841	12.8485	8.48567

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0011055 (v1.0)	10688	H3102B12-3	Mm.86406	Fbxl10	30841				TC869589		U,F	3.1701	3.2717	3.0353	3.2898	2.7532	2.9553	2.6751
0011055 (v1.0)	21775	L0910D07-3	Mm.86406	Fbxl10	30841	U042688	NAP034497-1		TC869591			3.4354	3.2018	3.487	3.3551	3.939	3.6649	3.8292

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0011055 (v1.0)	1452198_at	Mm.86406	Kdm2b	NM_001003953.1,NM_001005866.1,NM_013910.2	30841	1109.62	1900	601.15	880.775	319.5
0011055 (v1.0)	1459861_s_at	Mm.86406	Kdm2b	NM_001003953.1,NM_001005866.1,NM_013910.2	30841	8993.35	11521.9	4525.88	9380.75	3928.38

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0011055 (v1.0)	A_51_P139597	Fbxl10	NM_001003953	30841	1	1	P	0.407	0.094	P
0011055 (v1.0)	A_51_P404953	Fbxl10	NM_001003953	30841	1	1	P	0.351	0.117	P
0011055 (v1.0)	A_52_P24648	Fbxl10	NM_001003953	30841	1	1	P	0.524	0.102	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0011055 (v1.0)	Fbxl10	30841	10	10.67	9	11	12.67	10