DBTMEE:0011058
| Gene | Kdm4a |
| Synonyms | D4Ertd222e
JHDM3A
Jmjd2
Jmjd2a |
| Description | lysine (K)-specific demethylase 4A |
| Locus | NM_001161823 UCSC: chr4:117809609-117852648(-) OLP: chr4:117809609-117852648(-)
NM_172382 UCSC: chr4:117814648-117852648(-) OLP: chr4:117814648-117852648(-)
|
| DB links |
Entrez 230674
MGI 2446210
Ensembl ENSMUSG00000033326
Vega OTTMUSG00000008717
|
| Feature | protein-coding |
| GO_BP |
-
 7 Terms
|
| GO_MF |
-
7 Terms
zinc ion binding (GO:0008270)
oxidoreductase activity (GO:0016491)
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
ubiquitin protein ligase binding (GO:0031625)
methylated histone residue binding (GO:0035064)
metal ion binding (GO:0046872)
histone demethylase activity (H3-K36 specific) (GO:0051864)
|
| GO_CC |
-
4 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2010965 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 65.4489 | 76.9328 | 23.2102 | 12.0287 | 12.9777 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 68.4329 | 4.90922 | 83.9353 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 66.7973 | 76.1603 | 65.7243 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 68.4726 | 4.84198 | 72.0842 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 21.489 | 11.6142 | 9.26416 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 37.9546 | 3.9177 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0011058
(v1.0) | Kdm4a | NM_001161823,NM_172382 | 230674
| 0.782838 | 3.21915 |
|
| NIA60mer |
N/A |
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0011058
(v1.0) | 1435340_at | Mm.234234 | Kdm4a | NM_001161823.1,NM_172382.2 | 230674
| 695.875 | 909.075 | 477.8 | 0 | 379.225 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0011058
(v1.0) | A_52_P281209 | Jmjd2a | AK129187 | 230674
| 1 | 1 | P | 0.596 | 0.121 | P |
|
| Proteome |
N/A |
