DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011064
GeneKdm5c
SynonymsJarid1c
Smcx
Descriptionlysine (K)-specific demethylase 5C
LocusNM_013668 UCSC: chrX:148667773-148708897(+) OLP: chrX:148667773-148708897(+)
DB links


Entrez 20591
MGI 99781
Ensembl ENSMUSG00000025332
Vega OTTMUSG00000017219
Featureprotein-coding
GO_BP
  •   6 Terms
GO_MF
  •   9 Terms
      RNA polymerase II transcription factor binding (GO:0001085)
      DNA binding (GO:0003677)
      zinc ion binding (GO:0008270)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      histone demethylase activity (H3-K4 specific) (GO:0032453)
      identical protein binding (GO:0042802)
      metal ion binding (GO:0046872)
GO_CC
KEGG
Ver2_FPKM see DBTMEE:2010971 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011064
(v1.0)		Kdm5cNM_01366820591
14.918915.960317.218320.67626.1071
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011064
(v1.0)		Kdm5cNM_01366820591
15.5993.4043117.413
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011064
(v1.0)		Kdm5cNM_01366820591
15.226215.818.8543
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011064
(v1.0)		Kdm5cNM_01366820591
15.60813.3576820.6788
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011064
(v1.0)		Kdm5cNM_01366820591
15.941519.963520.8265
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011064
(v1.0)		Kdm5cNM_01366820591
7.406051.41565
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011064
(v1.0)		Kdm5cNM_01366820591
1.553792.52094
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011064
(v1.0)		18558L0214E04-3Mm.142655Smcx20591
U043801NAP094014-001Smcx;TC915202,TC801447P41230U,F,23.80153.62353.63333.67414.20353.93054.1396
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011064
(v1.0)		1444157_a_atMm.142655Kdm5cNM_013668.320591
0397.925000
0011064
(v1.0)		1457930_atMm.142655Kdm5cNM_013668.320591
000143.925109.425
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0011064
(v1.0)		A_51_P477902Jarid1cNM_01366820591
11P1.2070.31P
0011064
(v1.0)		A_52_P124247Jarid1cAK08188720591
11P0.06230.0229P
Proteome N/A