DBTMEE:0011745
| Gene | Lrch4 |
| Synonyms | LRN
LRRN4
SAP25 |
| Description | leucine-rich repeats and calponin homology (CH) domain containing 4 |
| Locus | NM_001168652 UCSC: chr5:138070351-138082327(+) OLP: chr5:138070351-138082327(+)
NM_146164 UCSC: chr5:138070351-138082327(+) OLP: chr5:138070351-138082327(+)
|
| DB links |
Entrez 231798
MGI 1917193
Ensembl ENSMUSG00000029720
Ensembl ENSMUSG00000093445
Vega OTTMUSG00000040073
Vega OTTMUSG00000040080
|
| Feature | protein-coding |
| GO_BP |
-
 1 Terms
negative regulation of transcription, DNA-dependent (GO:0045892)
|
| GO_MF |
-
1 Terms
|
| GO_CC |
-
2 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2011689 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0011745
(v1.0) | Lrch4 | NM_001081962,NM_001168652,NM_146164 | 231798
| 47.3882 | 39.9845 | 10.3949 | 5.50347 | 5.6652 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0011745
(v1.0) | Lrch4 | NM_001081962,NM_001168652,NM_146164 | 231798
| 49.5487 | 15.4428 | 43.624 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0011745
(v1.0) | Lrch4 | NM_001081962,NM_001168652,NM_146164 | 231798
| 48.3644 | 39.583 | 79.6827 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0011745
(v1.0) | Lrch4 | NM_001081962,NM_001168652,NM_146164 | 231798
| 49.5775 | 15.2313 | 87.3933 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0011745
(v1.0) | Lrch4 | NM_001081962,NM_001168652,NM_146164 | 231798
| 9.6241 | 5.31382 | 5.71045 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0011745
(v1.0) | Lrch4 | NM_001081962,NM_001168652,NM_146164 | 231798
| 46.8123 | 34.4581 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0011745
(v1.0) | Lrch4 | NM_001168652,NM_146164 | 231798
| 16.7499 | 9.76978 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0011745
(v1.0) | 2541 | C0335G07-3 | Mm.200763 | 2810008P14Rik | 231798
| | | 2810008P14Rik | TC921165,TC921164 | | | 3.1407 | 3.1605 | 3.0825 | 3.0621 | 2.6042 | 2.817 | 2.7179 |
0011745
(v1.0) | 21781 | L0910E09-3 | Mm.200763 | 2810008P14Rik | 231798
| U042702 | NAP096885-001 | 2810008P14Rik; | TC794326 | Q921G6 | | 2.9792 | 3.0668 | 2.7012 | 2.8488 | 2.6883 | 2.8258 | 2.6464 |
|
| MOE430 |
N/A |
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0011745
(v1.0) | A_52_P151278 | Lrch4 | NM_146164 | 231798
| 1 | 1 | P | 0.582 | 0.237 | P |
0011745
(v1.0) | A_52_P38964 | Lrch4 | AK131167 | 231798
| 1 | 1 | P | 2.206 | 0.0803 | P |
|
| Proteome |
| DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
|---|
0011745
(v1.0) | Lrch4 | 231798
| 0 | 2 | 0 | 0 | 2 | 0 |
|
