DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0011807

Gene

Lrrc40

Synonyms

Description

leucine rich repeat containing 40

Locus

NM_024194 UCSC: chr3:157699667-157731442(+) OLP: chr3:157699667-157731442(+)

DB links

Entrez 67144
MGI 1914394
Ensembl ENSMUSG00000063052
Vega OTTMUSG00000031933

Feature

protein-coding

GO_BP

GO_MF

GO_CC

KEGG

see DBTMEE:2011750 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0011807 (v1.0)	Lrrc40	NM_024194	67144	47.4314	72.3796	32.6464	11.588	10.3422

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0011807 (v1.0)	Lrrc40	NM_024194	67144	49.5938	1.07849	78.9678

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0011807 (v1.0)	Lrrc40	NM_024194	67144	48.4085	71.6529	61.108

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0011807 (v1.0)	Lrrc40	NM_024194	67144	49.6227	1.06371	67.0212

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0011807 (v1.0)	Lrrc40	NM_024194	67144	30.2255	11.1887	14.3971

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0011807 (v1.0)	Lrrc40	NM_024194	67144	110.978	28.0927

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0011807 (v1.0)	Lrrc40	NM_024194	67144	29.8792	37.0699

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0011807 (v1.0)	4842	G0109D01-3	Mm.24737	2610040E16Rik	67144	U004027	NAP121755-001	2610040E16Rik;	TC858936	Q9CRC8	U,F,2	4.1228	4.2784	4.4757	4.1031	3.527	3.955	3.6414
0011807 (v1.0)	21537	L0858F07-3	Mm.24737	2610040E16Rik	67144	U024797	NAP121766-001		TC849464		U,F,2	2.9404	2.9842	3.1665	3.0549	2.7088	3.0304	2.7858

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0011807 (v1.0)	1448720_at	Mm.358704	Lrrc40	NM_024194.5	67144	1054.6	2024.4	1815.03	215.375	435.5

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0011807 (v1.0)	A_51_P345139	Lrrc40	NM_024194	67144	1	1	P	1.116	0.469	P
0011807 (v1.0)	A_52_P246081	Lrrc40	NM_024194	67144	1	1	P	0.675	0.161	P
0011807 (v1.0)	A_52_P48446	Lrrc40	NM_024194	67144	1	1	P	0.835	0.325	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0011807 (v1.0)	Lrrc40	67144	0	1	0	0	1	0