DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0013596

Gene

Myo5b

Synonyms

Description

myosin VB

Locus

NM_201600 UCSC: chr18:74602273-74931131(+) OLP: chr18:74602273-74931131(+)

DB links

Entrez 17919
MGI 106598
Ensembl ENSMUSG00000025885
Vega OTTMUSG00000029560

Feature

protein-coding

GO_BP

3 Terms

GO_MF

4 Terms

GO_CC

6 Terms

KEGG

see DBTMEE:2014050 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0013596 (v1.0)	Myo5b	NM_201600	17919	133.285	75.486	11.8724	5.56488	0

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0013596 (v1.0)	Myo5b	NM_201600	17919	139.361	3.55449	82.3569

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0013596 (v1.0)	Myo5b	NM_201600	17919	136.031	74.7281	90.0589

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0013596 (v1.0)	Myo5b	NM_201600	17919	139.442	3.50581	98.7736

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0013596 (v1.0)	Myo5b	NM_201600	17919	10.992	5.37311	9.40357

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0013596 (v1.0)	Myo5b	NM_201600	17919	105.033	5.9975

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0013596 (v1.0)	Myo5b	NM_201600	17919	7.782	5.59963

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0013596 (v1.0)	11154	H3109B10-3	Mm.21322			U018896	NAP106422-1	Myo5b;	TC865143	P21271	U,F,2	3.7558	3.4132	3.0198	3.0908	3.4153	3.1676	3.392
0013596 (v1.0)	17687	L0006G07-3	Mm.3536	Myo5b	17919	U018896	NAP097458-001	Myo5b;	TC865143,TC865142	P21271	U,F,2	3.5277	3.5873	3.2115	3.0889	3.0311	3.0999	3.4062

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0013596 (v1.0)	1452298_a_at	Mm.260098	Myo5b	NM_201600.2	17919	666.625	313.35	305.6	0	193.95
0013596 (v1.0)	1437698_at	Mm.260098	Myo5b	NM_201600.2	17919	1706.97	1237.9	735.825	0	763.45
0013596 (v1.0)	1441104_at	Mm.260098	Myo5b	NM_201600.2	17919	2092.48	3844.2	0	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0013596 (v1.0)	A_51_P105879	Myo5b	NM_201600	17919	1	1	P	0.793	0.281	P
0013596 (v1.0)	A_52_P600600	Myo5b	NM_201600	17919	1	1	P	1.333	0.306	P
0013596 (v1.0)	A_52_P66130	Myo5b	AK033484	17919	1	1	P	0.768	0.23	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0013596 (v1.0)	Myo5b	17919	17	25	3	18	38	5