DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0014402

Gene

Odf2

Synonyms

cenexin
MMTEST29

Description

outer dense fiber of sperm tails 2

Locus

NM_001113214 UCSC: chr2:29745240-29778058(+) OLP: chr2:29745240-29778058(+)
NM_001177659 UCSC: chr2:29745240-29787266(+) OLP: chr2:29745240-29787266(+)
NM_001177661 UCSC: chr2:29745240-29778058(+) OLP: chr2:29745240-29778058(+)
NM_001113213 UCSC: chr2:29745240-29787266(+) OLP: chr2:29745240-29787266(+)
NM_013615 UCSC: chr2:29745583-29778058(+) OLP: chr2:29745583-29778058(+)

DB links

Entrez 18286
MGI 1098824
Ensembl ENSMUSG00000026790
Vega OTTMUSG00000019165

Feature

protein-coding

GO_BP

3 Terms

GO_MF

1 Terms

GO_CC

9 Terms

KEGG

see DBTMEE:2014866 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	36.5742	51.7654	11.6699	9.09548	3.58482

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	38.2417	584.628	56.4771

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	37.3277	51.2456	52.5825

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	38.264	576.621	57.6707

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	10.8045	8.78204	6.79489

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	105.413	13.2177

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0014402 (v1.0)	Odf2	NM_001113213,NM_001113214,NM_001177659,NM_001177661,NM_013615	18286	12.251	34.6207

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0014402 (v1.0)	12744	H3151F04-5		Odf2	18286	U042271	NAP021930-001		TC886646,TC886639,TC843900,TC843896,TC843895	O35135	U,F,2	2.5698	2.5846	2.512	2.4569	2.4959	2.3816	2.5531
0014402 (v1.0)	15381	K0133C05-3	Mm.663	Odf2	18286	U042271	NAP021930-001		TC886640,TC886639,TC843895	O35135	U,F,2	2.9854	3.1259	3.0026	3.0559	2.3536	2.664	2.7953
0014402 (v1.0)	22112	L0941G06-3				U042272	NAP030988-1	Odf2;		O35135	U,F,2	2.9342	2.8686	2.613	2.9608	3.1253	3.0906	3.0436

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0014402 (v1.0)	1426040_a_at	Mm.330116	Odf2	NM_001113213.1,NM_001177659.1,NM_001113214.1,NM_001177662.1,NM_013615.3,NM_001177661.1	18286	76.725	0	116.975	0	0
0014402 (v1.0)	1454735_at	Mm.330116	Odf2	NM_001113213.1,NM_001177659.1,NM_001113214.1,NM_001177662.1,NM_013615.3,NM_001177661.1	18286	572.45	770.275	787.25	0	248.925
0014402 (v1.0)	1435216_a_at	Mm.330116	Odf2	NM_001113213.1,NM_001177659.1,NM_001113214.1,NM_001177662.1,NM_013615.3,NM_001177661.1	18286	81.325	0	89.65	0	0
0014402 (v1.0)	1444101_at	Mm.330116	Odf2	NM_001113213.1,NM_001177659.1,NM_001113214.1,NM_001177662.1,NM_013615.3,NM_001177661.1	18286	0	0	81.35	172.175	135.8

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0014402 (v1.0)	A_51_P174228	Odf2	BC057001	18286	1	1	P	1.5	0.154	P
0014402 (v1.0)	A_51_P266987	Odf2	NM_013615	18286	1	1	P	0.711	0.183	P
0014402 (v1.0)	A_52_P618197	Odf2	BC057001	18286	1	1	P	3.848	0.0484	P

N/A