DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0015780

Gene

Pard3

Synonyms

ASIP
D8Ertd580e
PAR-3
Par3
Pard3a

Description

par-3 (partitioning defective 3) homolog (C. elegans)

Locus

NM_033620 UCSC: chr8:129587956-130136186(+) OLP: chr8:129587956-130136186(+)
NM_001122850 UCSC: chr8:129587956-129925959(+) OLP: chr8:129587956-129925959(+)
NM_001013581 UCSC: chr8:129823512-129957044(+) OLP: chr8:129823512-129957044(+)
NM_001013580 UCSC: chr8:129823552-129925959(+) OLP: chr8:129823552-129925959(+)

DB links

Entrez 93742
MGI 2135608
Ensembl ENSMUSG00000025812
Vega OTTMUSG00000034639

Feature

protein-coding

GO_BP

13 Terms

GO_MF

7 Terms

GO_CC

16 Terms

KEGG

5 Terms

see DBTMEE:2016248 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	88.0337	114.391	34.1446	13.0469	7.57053

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	92.0473	0.747915	124.803

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	89.8473	113.242	109.982

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	92.1008	0.737671	120.624

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	31.6126	12.5973	16.1949

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	34.5401	8.31902

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0015780 (v1.0)	Pard3	NM_001013580,NM_001013581,NM_001122850,NM_033620	93742	40.4821	31.2881

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0015780 (v1.0)	3888	C0904H05-3	Mm.14580	Pard3	93742	U009992	NAP092715-001	Pard3;	TC942391	Q99NH2	U,F,2	3.1367	3.248	2.5449	2.6285	2.6749	2.8766	3.219
0015780 (v1.0)	12828	H3152H12-3	Mm.196376	D8Ertd580e	52345	U009992	NAP092716-001	Pard3;	TC794221	Q99NH2	U,F,2	2.9395	2.7685	2.6418	2.4083	2.3356	2.4176	2.3963
0015780 (v1.0)	15689	K0226A03-3				U009992	NAP104899-1	Pard3;	TC795563	Q99NH2	U,F,2	4.0367	4.2562	4.1918	3.993	3.2357	3.4831	3.4677

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0015780 (v1.0)	1434775_at	Mm.299254	Pard3	NM_033620.2,NM_001122850.1,NM_001013580.3,NM_001013581.2	93742	115.3	166.6	67.225	0	144.625
0015780 (v1.0)	1436764_at	Mm.299254	Pard3	NM_033620.2,NM_001122850.1,NM_001013580.3,NM_001013581.2	93742	440.225	468.4	478.9	0	632.65

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0015780 (v1.0)	A_52_P224323	Pard3	NM_001013581	93742	1	1	P	1.285	0.241	P
0015780 (v1.0)	A_52_P51548	Pard3	AK037015	93742	1	1	P	0.457	0.0822	P
0015780 (v1.0)	A_52_P633612	Pard3	NM_001013580	93742	1	1	P	1.281	0.244	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0015780 (v1.0)	Pard3	93742	0	1	0	0	1	0