DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0017138

Gene

Ptbp2

Synonyms

brPTB

Description

polypyrimidine tract binding protein 2

Locus

NM_019550 UCSC: chr3:119421660-119486306(-) OLP: chr3:119421660-119486306(-)

DB links

Entrez 56195
MGI 1860489
Ensembl ENSMUSG00000028134

Feature

protein-coding

GO_BP

5 Terms

GO_MF

5 Terms

GO_CC

2 Terms

KEGG

see DBTMEE:2017640 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0017138 (v1.0)	Ptbp2	NM_019550	56195	64.6459	76.6972	34.7062	9.74359	10.224

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0017138 (v1.0)	Ptbp2	NM_019550	56195	67.5933	0.969167	83.6783

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0017138 (v1.0)	Ptbp2	NM_019550	56195	65.9777	75.927	47.9023

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0017138 (v1.0)	Ptbp2	NM_019550	56195	67.6325	0.955893	52.5376

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0017138 (v1.0)	Ptbp2	NM_019550	56195	32.1325	9.40783	11.7442

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0017138 (v1.0)	Ptbp2	NM_019550	56195	39.3545	18.8666

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0017138 (v1.0)	Ptbp2	NM_019550	56195	10.0012	36.4128

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0017138 (v1.0)	13006	H3156F04-3	Mm.103281			U043842	NAP025760-001	Ptbp2;	TC922020	Q91Z31	U,F,2	3.1476	3.1807	3.6605	3.5246	3.2522	3.4597	3.1595
0017138 (v1.0)	17996	L0043C06-3	Mm.29966	Ptbp2	56195	U043842	NAP002202-001	Ptbp2;	TC931215,TC898376	Q91Z31	U,F,2	4.088	4.2041	3.1893	2.8909	2.5626	2.6861	2.6879

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0017138 (v1.0)	1423470_at	Mm.29966	Ptbp2	NM_019550.2	56195	758.225	1214.5	819.625	0	55

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0017138 (v1.0)	A_51_P363818	Ptbp2	NM_019550	56195	1	1	P	0.601	0.134	P
0017138 (v1.0)	A_52_P593110	Ptbp2	AK015056	56195	1	1	P	0.588	0.118	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0017138 (v1.0)	Ptbp2	56195	11	13	3	14	17	3