DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0017310

Gene

Rab1

Synonyms

Gtbp
Rab-1
Rab1A
ras-related YPT1 protein
Ypt1

Description

RAB1, member RAS oncogene family

Locus

NM_008996 UCSC: chr11:20101605-20126859(+) OLP: chr11:20101605-20126859(+)

DB links

Entrez 19324
MGI 97842
Ensembl ENSMUSG00000020149
Vega OTTMUSG00000005223

Feature

protein-coding

GO_BP

6 Terms

GO_MF

2 Terms

GO_CC

5 Terms

KEGG

see DBTMEE:2017820 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0017310 (v1.0)	Rab1	NM_008996	19324	10.5565	4.24362	35.2452	47.5393	46.8456

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0017310 (v1.0)	Rab1	NM_008996	19324	11.0378	22.9456	4.62988

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0017310 (v1.0)	Rab1	NM_008996	19324	10.7739	4.20101	3.79747

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0017310 (v1.0)	Rab1	NM_008996	19324	11.0442	22.6314	4.16494

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0017310 (v1.0)	Rab1	NM_008996	19324	32.6315	45.9011	55.6672

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0017310 (v1.0)	Rab1	NM_008996	19324	21.3783	30.7156

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0017310 (v1.0)	Rab1	NM_008996	19324	1.02372	0.946377

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0017310 (v1.0)	5543	H3002E05-3	Mm.14530	Rab1	19324	U012352	NAP122176-001	Rab1;	TC835696	P11476	U,F,2	3.1024	3.1881	3.5414	3.7663	3.9109	4.1605	4.1874
0017310 (v1.0)	18109	L0062F03-3	Mm.14530	Rab1	19324	U032552	NAP123714-1				U,F,2	2.9824	2.8235	2.4312	2.2398	2.4365	2.2614	2.4205

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0017310 (v1.0)	1416082_at	Mm.271944	Rab1	NM_008996.3	19324	1012.15	226.525	1879.45	3068.27	3266.62

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0017310 (v1.0)	A_51_P326023	Rab1	NM_008996	19324	1	1	P	0.702	0.193	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0017310 (v1.0)	Rab1	19324	4	5.5	4	8	21.5	16