DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0017518

Gene

Rb1cc1

Synonyms

Cc1
Fip200
LaXp180

Description

RB1-inducible coiled-coil 1

Locus

NM_009826 UCSC: chr1:6204743-6266185(+) OLP: chr1:6204743-6266185(+)

DB links

Entrez 12421
MGI 1341850
Ensembl ENSMUSG00000025907
Vega OTTMUSG00000033467

Feature

protein-coding

GO_BP

12 Terms

GO_MF

2 Terms

GO_CC

5 Terms

KEGG

see DBTMEE:2018031 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0017518 (v1.0)	Rb1cc1	NM_009826	12421	36.9868	40.9631	113.692	190.288	17.0251

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0017518 (v1.0)	Rb1cc1	NM_009826	12421	38.6731	3.00613	44.6917

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0017518 (v1.0)	Rb1cc1	NM_009826	12421	37.7487	40.5518	34.1767

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0017518 (v1.0)	Rb1cc1	NM_009826	12421	38.6955	2.96495	37.4838

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0017518 (v1.0)	Rb1cc1	NM_009826	12421	105.261	183.731	167.908

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0017518 (v1.0)	Rb1cc1	NM_009826	12421	27.4718	188.894

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0017518 (v1.0)	Rb1cc1	NM_009826	12421	9.36308	22.3872

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0017518 (v1.0)	3823	C0902B02-3	Mm.141567	Rb1cc1	12421	U000013	NAP092549-001	Cc1;Rb1cc1;	TC864165,TC821357	Q61384	U,F,2	3.1791	3.0145	2.6056	3.3261	2.6531	2.7515	2.5701
0017518 (v1.0)	9303	H3079D07-3	Mm.141567	Rb1cc1	12421	U000013	NAP092549-001	Cc1;Rb1cc1;	TC864165,TC821358,TC821357	Q61384	U,F,2	3.2005	3.3359	3.4946	3.7766	3.3972	3.3908	3.1582
0017518 (v1.0)	16241	K0346D06-3	Mm.141567	Rb1cc1	12421			Rb1cc1				3.2991	3.0256	2.7898	3.4506	3.467	3.4268	3.2516
0017518 (v1.0)	17317	K0605G06-3	Mm.141567	Rb1cc1	12421	U000013	NAP032808-1	Cc1;Rb1cc1;	TC864166	Q61384	U,F,2	3.3083	3.2766	3.1871	3.4902	3.4518	3.3766	3.2624

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0017518 (v1.0)	1418968_at	Mm.293811	Rb1cc1	NM_009826.4	12421	206.475	252.1	720.275	373.575	116

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0017518 (v1.0)	A_51_P332100	Rb1cc1	NM_009826	12421	1	1	P	0.241	0.0863	P
0017518 (v1.0)	A_52_P347826	Rb1cc1	NM_009826	12421	1	1	P	1.243	0.274	P
0017518 (v1.0)	A_52_P542172	Rb1cc1	NM_009826	12421	1	1	P	0.77	0.233	P
0017518 (v1.0)	A_52_P558601	Rb1cc1	NM_009826	12421	1	1	P	0.236	0.0585	P

N/A