DBTMEE

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DBTMEE:0018187

Gene

Rtcd1

Synonyms

Rtca

Description

RNA 3'-terminal phosphate cyclase

Locus

NM_025517 UCSC: chr3:116191882-116211093(-) OLP: chr3:116191882-116211093(-)

DB links

Entrez 66368
MGI 1913618
Ensembl ENSMUSG00000000339
Vega OTTMUSG00000027075

Feature

protein-coding

GO_BP

GO_MF

GO_CC

KEGG

Ver2_FPKM

see (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0018187 (v1.0)	Rtcd1	NM_025517	66368	7.1649	7.11844	5.15177	5.14538	5.86954

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0018187 (v1.0)	Rtcd1	NM_025517	66368	7.49156	11.3934	7.76637

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0018187 (v1.0)	Rtcd1	NM_025517	66368	7.3125	7.04696	8.55445

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0018187 (v1.0)	Rtcd1	NM_025517	66368	7.49591	11.2374	9.38223

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0018187 (v1.0)	Rtcd1	NM_025517	66368	4.76974	4.96807	6.7894

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0018187 (v1.0)	Rtcd1	NM_025517	66368	5.43322	3.97058

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0018187 (v1.0)	Rtcd1	NM_025517	66368	12.8021	7.40141

NIA60mer

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018187 (v1.0)	989	C0171B11-3	Mm.34038	2310009A18Rik	66368	U024568	NAP006492-001	2310009A18Rik;	TC887058	Q91YL8		3.1757	3.3294	3.3073	3.2855	2.597	3.0878	3.0352

MOE430

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0018187 (v1.0)	1424095_at	Mm.251228	Rtcd1	NM_025517.3	66368	177.925	174.3	155.275	0	218.1

Agilent44K

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0018187 (v1.0)	A_51_P190765	Rtcd1	NM_025517	66368	1	1	P	0.743	0.224	P
0018187 (v1.0)	A_52_P378406	Rtcd1	NM_025517	66368	1	1	P	0.704	0.182	P

Proteome

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0018187 (v1.0)	Rtcd1	66368	2	1	1	2	1	1