DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0018570

Gene

Serbp1

Synonyms

Description

serpine1 mRNA binding protein 1

Locus

NM_001113566 UCSC: chr6:67216973-67239296(+) OLP: chr6:67216973-67239296(+)
NM_001113565 UCSC: chr6:67216973-67239296(+) OLP: chr6:67216973-67239296(+)
NM_001113564 UCSC: chr6:67216973-67239296(+) OLP: chr6:67216973-67239296(+)
NM_025814 UCSC: chr6:67216973-67239296(+) OLP: chr6:67216973-67239296(+)

DB links

Entrez 66870
MGI 1914120
Ensembl ENSMUSG00000036371

Feature

protein-coding

GO_BP

1 Terms

GO_MF

2 Terms

GO_CC

3 Terms

KEGG

see DBTMEE:2019111 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	22.3283	17.9389	46.2593	82.366	35.3275

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	23.3463	8.94985	19.5717

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	22.7883	17.7587	19.2892

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	23.3599	8.82727	21.1558

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	42.8289	79.5276	76.7611

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	73.6948	36.1346

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0018570 (v1.0)	Serbp1	NM_001113564,NM_001113565,NM_001113566,NM_025814	66870	26.4936	31.7723

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018570 (v1.0)	7162	H3043E10-3		1200009K13Rik	66870	U006983	NAP000192-002	1200009K13Rik;	TC934869,TC897458,TC800874	Q91WP3	U,F,2	3.9417	3.6407	3.7522	4.4151	4.0906	4.3306	4.1052

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0018570 (v1.0)	1418563_at	Mm.240490	Serbp1	NM_025814.2,NM_001113564.1,NM_001113565.1,NM_001113566.1	66870	125.3	151.475	106.85	250.125	275.925
0018570 (v1.0)	1437280_s_at	Mm.240490	Serbp1	NM_025814.2,NM_001113564.1,NM_001113565.1,NM_001113566.1	66870	2446.82	3940.35	3992.43	8477.22	5598.2
0018570 (v1.0)	1440195_at	Mm.240490	Serbp1	NM_025814.2,NM_001113564.1,NM_001113565.1,NM_001113566.1	66870	0	0	0	51.3	68.825
0018570 (v1.0)	1441501_at	Mm.240490	Serbp1	NM_025814.2,NM_001113564.1,NM_001113565.1,NM_001113566.1	66870	0	0	0	264.725	315.325

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0018570 (v1.0)	A_51_P451847	1200009K13Rik	NM_025814	66870	1	1	P	1.079	0.602	P
0018570 (v1.0)	A_52_P482925	1200009K13Rik	NM_025814	66870	1	1	P	0.789	0.254	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0018570 (v1.0)	Serbp1	66870	5	4.5	6	12	10.5	11