DBTMEE:0019309
| Gene | Smarca5 |
| Synonyms | MommeD4
Snf2h |
| Description | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 |
| Locus | NM_053124 UCSC: chr8:83223843-83263358(-) OLP: chr8:83223843-83263358(-)
|
| DB links |
Entrez 93762
MGI 1935129
Ensembl ENSMUSG00000031715
Vega OTTMUSG00000023886
|
| Feature | protein-coding |
| GO_BP |
-
 12 Terms
|
| GO_MF |
-
12 Terms
|
| GO_CC |
-
7 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2019867 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 25.1223 | 21.1743 | 73.9609 | 81.0763 | 16.349 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 26.2676 | 2.47533 | 23.1017 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 25.6398 | 20.9617 | 18.1531 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 26.2829 | 2.44143 | 19.9097 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 68.4763 | 78.2824 | 70.0332 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 21.0613 | 88.7914 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0019309
(v1.0) | Smarca5 | NM_053124 | 93762
| 4.36687 | 14.6153 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019309
(v1.0) | 5110 | AA190286.1 | Mm.133447 | Smarca5 | 93762
| U030004 | NAP000002-009 | Smarca5; | TC904326 | | U,F,2 | 3.9618 | 3.9833 | 4.1292 | 4.4996 | 4.5076 | 4.4115 | 4.384 |
0019309
(v1.0) | 5178 | AA675554.1 | Mm.133447 | Smarca5 | 93762
| U030004 | NAP000002-009 | | TC904326 | | U,F,2 | 3.226 | 3.0296 | 3.0918 | 3.4194 | 2.8333 | 3.1975 | 2.9911 |
0019309
(v1.0) | 8168 | H3061A01-3 | Mm.133447 | Smarca5 | 93762
| U030004 | NAP100298-001 | Smarca5; | TC904326 | | U,F,2 | 2.6439 | 2.6061 | 2.6546 | 2.8331 | 2.5717 | 2.7752 | 2.6581 |
|
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0019309
(v1.0) | 1424205_at | Mm.246803 | Smarca5 | NM_053124.2 | 93762
| 340.3 | 457.05 | 196.55 | 507.875 | 241.225 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0019309
(v1.0) | A_51_P221661 | Smarca5 | NM_053124 | 93762
| 1 | 1 | P | 1.173 | 0.363 | P |
0019309
(v1.0) | A_52_P207203 | Smarca5 | NM_053124 | 93762
| 1 | 1 | P | 1.825 | 0.122 | P |
0019309
(v1.0) | A_52_P304881 | Smarca5 | NM_053124 | 93762
| 1 | 1 | P | 2.214 | 0.0991 | P |
0019309
(v1.0) | A_52_P601095 | Smarca5 | NM_053124 | 93762
| 1 | 1 | P | 1.466 | 0.166 | P |
|
| Proteome |
| DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
|---|
0019309
(v1.0) | Smarca5 | 93762
| 0 | 2 | 0 | 0 | 2 | 0 |
|
