DBTMEE:0019337
| Gene | Smg7 |
| Synonyms | |
| Description | Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) |
| Locus | NM_001160256 UCSC: chr1:154684125-154749776(-) OLP: chr1:154684125-154749776(-)
NM_001160257 UCSC: chr1:154684125-154725298(-) OLP: chr1:154684125-154725298(-)
NM_001005507 UCSC: chr1:154684125-154749776(-) OLP: chr1:154684125-154749776(-)
|
| DB links |
Entrez 226517
MGI 2682334
Ensembl ENSMUSG00000042772
|
| Feature | protein-coding |
| GO_BP |
-
 1 Terms
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
|
| GO_MF |
-
1 Terms
|
| GO_CC |
-
3 Terms
|
| KEGG |
-
1 Terms
|
| Ver2_FPKM |
see DBTMEE:2019899 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 14.4465 | 9.88775 | 47.8717 | 43.5857 | 12.4071 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 15.1052 | 9.93788 | 10.7877 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 14.7441 | 9.78847 | 9.36317 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 15.1139 | 9.80176 | 10.2692 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 44.3217 | 42.0837 | 35.0977 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 9.23209 | 29.194 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0019337
(v1.0) | Smg7 | NM_001005507,NM_001160256,NM_001160257 | 226517
| 0.48706 | 1.6524 |
|
| NIA60mer |
N/A |
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0019337
(v1.0) | 1455574_at | Mm.270775 | Smg7 | NM_001160256.1,NM_001160257.1,NM_001005507.2 | 226517
| 155.525 | 156.075 | 0 | 792.4 | 340.875 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0019337
(v1.0) | A_52_P184052 | 9430023P16Rik | NM_001005507 | 226517
| 1 | 1 | P | 0.765 | 0.373 | P |
0019337
(v1.0) | A_52_P487024 | 9430023P16Rik | NM_001005507 | 226517
| 1 | 1 | P | 1.248 | 0.298 | P |
0019337
(v1.0) | A_52_P589268 | 9430023P16Rik | NM_001005507 | 226517
| 1 | 1 | P | 0.641 | 0.265 | P |
|
| Proteome |
N/A |
