DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0019389

Gene

Snapc1

Synonyms

Description

small nuclear RNA activating complex, polypeptide 1

Locus

NM_178392 UCSC: chr12:75065517-75085807(+) OLP: chr12:75065517-75085807(+)

DB links

Entrez 75627
MGI 1922877
Ensembl ENSMUSG00000021113

Feature

protein-coding

GO_BP

2 Terms

GO_MF

1 Terms

GO_CC

1 Terms

KEGG

see DBTMEE:2019965 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0019389 (v1.0)	Snapc1	NM_178392	75627	19.8916	22.5914	16.1593	6.18721	3.70408

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0019389 (v1.0)	Snapc1	NM_178392	75627	20.7985	1.63174	24.6477

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0019389 (v1.0)	Snapc1	NM_178392	75627	20.3014	22.3646	22.0117

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0019389 (v1.0)	Snapc1	NM_178392	75627	20.8106	1.60939	24.1417

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0019389 (v1.0)	Snapc1	NM_178392	75627	14.961	5.974	6.46416

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0019389 (v1.0)	Snapc1	NM_178392	75627	9.51053	11.6493

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0019389 (v1.0)	Snapc1	NM_178392	75627	19.4414	23.8277

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019389 (v1.0)	6333	H3023C01-5		2700033G17Rik	75627	U014088	NAP096635-001	2700033G17Rik;	TC865009		U,F,2	2.6465	2.6892	2.7393	2.7845	2.1385	2.3044	2.1762
0019389 (v1.0)	18249	L0072C11-3	Mm.25937	2700033G17Rik	75627	U014088	NAP096635-001	2700033G17Rik;	TC865011,TC865009		U,F,2	3.789	4.1943	4.7022	4.3941	3.7432	4.1537	3.8115

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0019389 (v1.0)	1429335_at	Mm.25937	Snapc1	NM_178392.4	75627	671.775	708.075	739.825	209.275	176.275

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0019389 (v1.0)	A_51_P282268	Snapc1	NM_178392	75627	1	1	P	0.465	0.0881	P
0019389 (v1.0)	A_52_P686405	Snapc1	NM_178392	75627	1	1	P	2.083	0.104	P

N/A