DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0019574

Gene

Snx4

Synonyms

Description

sorting nexin 4

Locus

NM_080557 UCSC: chr16:33251542-33299648(+) OLP: chr16:33251542-33299648(+)

DB links

Entrez 69150
MGI 1916400
Ensembl ENSMUSG00000022808

Feature

protein-coding

GO_BP

4 Terms

GO_MF

2 Terms

GO_CC

5 Terms

KEGG

see DBTMEE:2020151 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0019574 (v1.0)	Snx4	NM_080557	69150	9.52243	14.6366	7.47713	7.94853	6.82581

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0019574 (v1.0)	Snx4	NM_080557	69150	9.95658	6.14055	15.9689

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0019574 (v1.0)	Snx4	NM_080557	69150	9.7186	14.4897	10.7364

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0019574 (v1.0)	Snx4	NM_080557	69150	9.96236	6.05645	11.7753

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0019574 (v1.0)	Snx4	NM_080557	69150	6.92266	7.67462	7.54008

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0019574 (v1.0)	Snx4	NM_080557	69150	32.2697	21.1266

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0019574 (v1.0)	Snx4	NM_080557	69150	25.1046	29.8625

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019574 (v1.0)	15544	K0203A09-3	Mm.28196	Snx4	69150	U017037	NAP095480-001		TC869372	Q91YJ2	U,F,2	2.9736	2.9072	2.9744	2.9105	2.9793	2.9581	2.9188
0019574 (v1.0)	18799	L0227H03-3	Mm.28196	Snx4	69150	U017037	NAP095480-001	Snx4;	TC869373,TC869372	Q91YJ2		3.2863	3.2096	2.8501	2.7564	2.4099	2.6656	2.5039

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0019574 (v1.0)	1460182_at	Mm.28196	Snx4	NM_080557.2	69150	608.3	1177.9	545.1	455.225	590.575
0019574 (v1.0)	1416396_at	Mm.28196	Snx4	NM_080557.2	69150	56.525	0	0	66.5	40.225

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0019574 (v1.0)	A_51_P516808	Snx4	NM_080557	69150	1	1	P	0.768	0.23	P
0019574 (v1.0)	A_52_P362135	Snx4	NM_080557	69150	1	1	P	0.819	0.299	P

N/A