DBTMEE:0019668
| Gene | Spast |
| Synonyms | Spg4 |
| Description | spastin |
| Locus | NM_016962 UCSC: chr17:74738327-74790453(+) OLP: chr17:74738327-74790453(+)
NM_001162870 UCSC: chr17:74738327-74790453(+) OLP: chr17:74738327-74790453(+)
|
| DB links |
Entrez 50850
MGI 1858896
Ensembl ENSMUSG00000024068
|
| Feature | protein-coding |
| GO_BP |
-
 11 Terms
|
| GO_MF |
-
8 Terms
|
| GO_CC |
-
9 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2020248 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0019668
(v1.0) | Spast | NM_001162870,NM_016962 | 50850
| 76.3686 | 69.4074 | 45.8839 | 20.4845 | 7.5183 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0019668
(v1.0) | Spast | NM_001162870,NM_016962 | 50850
| 79.8504 | 2.62366 | 75.725 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0019668
(v1.0) | Spast | NM_001162870,NM_016962 | 50850
| 77.9419 | 68.7105 | 50.5666 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0019668
(v1.0) | Spast | NM_001162870,NM_016962 | 50850
| 79.8968 | 2.58772 | 55.4597 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0019668
(v1.0) | Spast | NM_001162870,NM_016962 | 50850
| 42.4814 | 19.7786 | 20.7109 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0019668
(v1.0) | Spast | NM_001162870,NM_016962 | 50850
| 11.7974 | 22.6764 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019668
(v1.0) | 18825 | L0228G10-3 | Mm.19804 | Spg4 | 50850
| U018222 | NAP007146-001 | Spg4; | TC941677 | Q9CVK0 | U,F,2 | 4.184 | 4.2966 | 3.2492 | 3.3002 | 3.2279 | 3.1313 | 3.2652 |
|
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0019668
(v1.0) | 1460400_at | Mm.19804 | Spast | NM_001162870.1,NM_016962.2 | 50850
| 376.3 | 176.4 | 687.075 | 278.6 | 133.825 |
0019668
(v1.0) | 1454794_at | Mm.19804 | Spast | NM_001162870.1,NM_016962.2 | 50850
| 969.2 | 1455.95 | 803.25 | 133.425 | 180.55 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0019668
(v1.0) | A_51_P348652 | Spg4 | NM_016962 | 50850
| 1 | 1 | P | 1.585 | 0.136 | P |
0019668
(v1.0) | A_52_P559061 | Spg4 | AK129282 | 50850
| 1 | 1 | P | 0.669 | 0.156 | P |
|
| Proteome |
| DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
|---|
0019668
(v1.0) | Spast | 50850
| 4 | 5 | 1 | 4 | 7 | 1 |
|
