DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0021249

Gene

Tra2b

Synonyms

Sfrs10
Silg41
TRA2beta

Description

transformer 2 beta homolog (Drosophila)

Locus

NM_009186 UCSC: chr16:22245814-22266002(-) OLP: chr16:22245814-22266002(-)

DB links

Entrez 20462
MGI 106016
Ensembl ENSMUSG00000022858
Vega OTTMUSG00000035118

Feature

protein-coding

GO_BP

5 Terms

GO_MF

4 Terms

GO_CC

1 Terms

KEGG

1 Terms

see DBTMEE:2021873 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0021249 (v1.0)	Tra2b	NM_009186	20462	31.3332	37.3996	64.4541	61.0375	36.6981

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0021249 (v1.0)	Tra2b	NM_009186	20462	32.7617	11.7217	40.8038

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0021249 (v1.0)	Tra2b	NM_009186	20462	31.9787	37.0241	33.808

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0021249 (v1.0)	Tra2b	NM_009186	20462	32.7808	11.5612	37.0795

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0021249 (v1.0)	Tra2b	NM_009186	20462	59.6745	58.9341	55.6749

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0021249 (v1.0)	Tra2b	NM_009186	20462	26.1088	56.9379

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0021249 (v1.0)	Tra2b	NM_009186	20462	23.1873	45.1726

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021249 (v1.0)	17512	K0636C05-3	Mm.2984	Silg41	20462							3.8393	4.0931	3.4333	3.6263	3.6878	3.6801	3.6847
0021249 (v1.0)	19487	L0275F02-3	Mm.2984	Silg41	20462	U036910	NAP092763-001		TC874237	Q64283	U,F,2	3.7503	4.0136	4.3429	4.0304	3.6875	3.8802	3.6452

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0021249 (v1.0)	1427432_a_at	Mm.210352	Tra2b	NM_009186.4	20462	882.675	1299.7	827.15	1486.95	1562.75
0021249 (v1.0)	1419543_a_at	Mm.210352	Tra2b	NM_009186.4	20462	316.1	418.75	1652.93	1154.32	1033
0021249 (v1.0)	1441466_at	Mm.210352	Tra2b	NM_009186.4	20462	80.95	0	173.1	274	184.175

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0021249 (v1.0)	A_51_P264322	Sfrs10	NM_009186	20462	1	1	P	0.533	0.119	P

N/A