DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0021405

Gene

Trnt1

Synonyms

CGI-47

Description

tRNA nucleotidyl transferase, CCA-adding, 1

Locus

NM_001242358 UCSC: chr6:106719132-106732468(+) OLP: chr6:106719132-106732468(+)
NM_001242360 UCSC: chr6:106719132-106727675(+) OLP: chr6:106719132-106727675(+)
NM_027296 UCSC: chr6:106719132-106732468(+) OLP: chr6:106719132-106732468(+)

DB links

Entrez 70047
MGI 1917297
Ensembl ENSMUSG00000013736
Vega OTTMUSG00000023531

Feature

protein-coding

GO_BP

4 Terms

GO_MF

11 Terms

GO_CC

3 Terms

KEGG

1 Terms

see DBTMEE:2022033 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0021405 (v1.0)	Trnt1	NM_027296	70047	58.6316	59.5878	53.0816	51.1433	17.9273

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0021405 (v1.0)	Trnt1	NM_027296	70047	61.3047	4.11265	65.0115

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0021405 (v1.0)	Trnt1	NM_027296	70047	59.8394	58.9894	49.3324

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0021405 (v1.0)	Trnt1	NM_027296	70047	61.3403	4.05632	54.1061

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0021405 (v1.0)	Trnt1	NM_027296	70047	49.1453	49.3809	50.8458

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0021405 (v1.0)	Trnt1	NM_027296	70047	68.4957	27.0238

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0021405 (v1.0)	Trnt1	NM_027296	70047	24.4959	26.3834

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021405 (v1.0)	1204	C0185C05-3	Mm.196332	Trnt1	70047	U027701	NAP000952-001	AF229032;	TC849128	Q9JKR4	U,F,2	3.6151	3.6559	3.7157	3.5843	3.492	3.6226	3.543

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0021405 (v1.0)	1425561_at	Mm.196332	Trnt1	NM_027296.2	70047	123.3	0	0	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0021405 (v1.0)	A_52_P456629	Trnt1	NM_027296	70047	1	1	P	0.555	0.108	P
0021405 (v1.0)	A_52_P626756	Trnt1	NM_027296	70047	1	1	P	0.727	0.193	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0021405 (v1.0)	Trnt1	70047	0	0	1	0	0	1