DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0021479

Gene

Tsnax

Synonyms

Trax

Description

translin-associated factor X

Locus

NM_016909 UCSC: chr8:127536897-127558092(+) OLP: chr8:127536897-127558092(+)
NM_016909 UCSC: chr8_random:580370-601515(-) OLP: chr8_random:580370-601515(-)

DB links

Entrez 53424
MGI 1855672
Ensembl ENSMUSG00000056820

Feature

protein-coding

GO_BP

3 Terms

GO_MF

7 Terms

GO_CC

3 Terms

KEGG

see DBTMEE:2022108 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0021479 (v1.0)	Tsnax	NM_016909	53424	64.3039	23.9642	19.7161	24.4354	26.5916

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0021479 (v1.0)	Tsnax	NM_016909	53424	67.2356	10.1839	26.1455

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0021479 (v1.0)	Tsnax	NM_016909	53424	65.6286	23.7236	27.9079

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0021479 (v1.0)	Tsnax	NM_016909	53424	67.2747	10.0444	30.6084

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0021479 (v1.0)	Tsnax	NM_016909	53424	18.254	23.5934	28.839

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0021479 (v1.0)	Tsnax	NM_016909	53424	56.4553	8.67929

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0021479 (v1.0)	Tsnax	NM_016909	53424	6.69747	3.75192

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021479 (v1.0)	22004	L0932F03-3	Mm.5248	Tsnax	53424	U009967	NAP033922-1	Tsnax;	TC904196	Q9QZE7	U,F,2	2.4232	2.2099	2.3929	2.3048	2.4541	2.3591	2.4413
0021479 (v1.0)	22044	L0936G11-3	Mm.5248	Tsnax	53424	U009967	NAP097640-001	Tsnax;	TC904195	Q9QZE7	U,F,2	2.9348	3.1118	2.8913	3.2236	2.5057	2.7815	2.549

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0021479 (v1.0)	1423395_at	Mm.458292~Mm.5248	LOC100039215~Tsnax	~NM_016909.2	100039215 53424	421.075	374.4	219.75	0	300.6

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0021479 (v1.0)	A_51_P236397	Tsnax	NM_016909	53424	1	1	P	0.754	0.233	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0021479 (v1.0)	Tsnax	53424	3	6	0	4	14	0