DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0021909

Gene

Usp16

Synonyms

Usp21
ESTM28
Usp23
W53272

Description

ubiquitin specific peptidase 21

Locus

NM_024258 UCSC: chr16:87455230-87483758(+) OLP: chr16:87455230-87483758(+)

DB links

Entrez 74112
MGI 1921362
Ensembl ENSMUSG00000025616
Vega OTTMUSG00000026485

Feature

protein-coding

GO_BP

14 Terms

GO_MF

11 Terms

GO_CC

1 Terms

KEGG

see DBTMEE:2022552 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0021909 (v1.0)	Usp16	NM_024258	74112	37.4772	44.092	104.021	95.2053	8.16779

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0021909 (v1.0)	Usp16	NM_024258	74112	39.1858	5.62625	48.1054

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0021909 (v1.0)	Usp16	NM_024258	74112	38.2493	43.6493	41.1306

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0021909 (v1.0)	Usp16	NM_024258	74112	39.2086	5.54919	45.1107

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0021909 (v1.0)	Usp16	NM_024258	74112	96.3073	91.9245	74.9993

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0021909 (v1.0)	Usp16	NM_024258	74112	45.3227	103.296

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0021909 (v1.0)	Usp16	NM_024258	74112	14.029	20.3833

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021909 (v1.0)	7675	H3052C10-3	Mm.7747	6330514E22Rik	76164	U017333	NAP056196-1	Usp16;	TC935636	Q99KM0	U,F,2	2.974	2.8984	3.1059	3.2112	3.1739	2.9859	2.9987
0021909 (v1.0)	12781	H3152C04-3	Mm.196253	Usp16	74112	U017333	NAP121661-001	Usp16;	TC935635,TC935633	Q99KM0	U,F,2	3.4731	3.7551	4.2026	4.3258	3.7095	3.9034	3.5806

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0021909 (v1.0)	1431951_a_at	Mm.152941	Usp16	NM_024258.2	74112	592.225	361.35	1497.9	751.375	230.875
0021909 (v1.0)	1430203_at	Mm.152941	Usp16	NM_024258.2	74112	0	0	881.075	425.725	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0021909 (v1.0)	A_51_P513424	Usp16	NM_024258	74112	1	1	P	0.981	0.882	P

N/A