DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2000765
Gene4833439L19Rik
Synonyms
DescriptionRIKEN cDNA 4833439L19 gene
LocusNM_001252648 UCSC: chr13:54652579-54666743(-) OLP: chr13:54652579-54666743(-)
NM_001252647 UCSC: chr13:54652579-54666743(-) OLP: chr13:54652579-54666743(-)
NM_001252646 UCSC: chr13:54652579-54666743(-) OLP: chr13:54652579-54666743(-)
NM_001252645 UCSC: chr13:54652579-54666743(-) OLP: chr13:54652579-54666743(-)
NM_133797 UCSC: chr13:54652579-54666743(-) OLP: chr13:54652579-54666743(-)
DB links


Entrez 97820
MGI 1921162
Ensembl ENSMUSG00000025871
Vega OTTMUSG00000032658
Featureprotein-coding
GO_BP
  •   1 Terms
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.488
SPR
0.745
Oo
1.083
1C
1.202
2C
1.369
4C
1.303
ESC
1.387
MEF
1.131
p1C
1.339
p4C
1.347
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2000765
(v2.0)		4833439L19RikNM_001252645,NM_001252646,NM_001252647,NM_001252648,NM_13379797820
29.76754.5558411.09814.910322.39219.08223.380312.512920.848621.2165
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.065
H3.3
Rep.1
-0.242
H3.3
Rep.2
1.451
H3K4me3
Rep.1
0.653
H3K4me3
Rep.2
-1.762
H3K27me3
Rep.1
-1.209
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2000765
(v2.0)		4833439L19Rik97820
649/476-0.0654436/476-0.2423109/4761.4513298/4760.652933/476-1.7621311/476-1.2094
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.286
H3.3
Rep.1
-0.02
H3.3
Rep.2
2.719
H3K4me3
Rep.1
1.928
H3K4me3
Rep.2
-2.612
H3K27me3
Rep.1
-1.067
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2000765
(v2.0)		4833439L19Rik97820
303/1740.2859186/174-0.0199100/1742.7191266/1741.92836/174-2.6119125/174-1.0674
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2000765
(v2.0)		4833439L19Rik97820
75.428913356.71
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2000765
(v2.0)		4833439L19Rik97820
24.33287532.44
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0000856
(v1.0)		6443H3025C03-3Mm.245934833439L19Rik97820
U034796NAP120869-0014833439L19Rik;4930558H15Rik;C81457;TC903177,TC903168Q9D4T9U,F,23.40633.30693.64253.47193.80963.66493.7636
MOE430 N/A
Agilent44K N/A
Proteome N/A