DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2002451
GeneAnkrd40
SynonymsGcap15
Descriptionankyrin repeat domain 40
LocusNM_146024 UCSC: chr11:94189315-94200823(+) OLP: chr11:94189315-94200823(+)
NM_027799 UCSC: chr11:94189315-94203161(+) OLP: chr11:94189315-94203161(+)
DB links


Entrez 71452
MGI 1918702
Ensembl ENSMUSG00000020864
Vega OTTMUSG00000001717
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.524
SPR
1.546
Oo
1.629
1C
1.521
2C
1.344
4C
1.07
ESC
1.382
MEF
1.67
p1C
1.254
p4C
1.076
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002451
(v2.0)		Ankrd40NM_027799,NM_14602471452
32.439934.166741.529532.200821.054910.750323.083445.802416.940110.9082
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.079
H3.3
Rep.1
-0.165
H3.3
Rep.2
1.095
H3K4me3
Rep.1
0.072
H3K4me3
Rep.2
-1.48
H3K27me3
Rep.1
-1.404
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002451
(v2.0)		Ankrd4071452
624/4140.0789400/414-0.165474/4141.0947173/4140.07235/414-1.4802236/414-1.4044
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.408
H3.3
Rep.1
0.114
H3.3
Rep.2
2.423
H3K4me3
Rep.1
1.394
H3K4me3
Rep.2
-2.153
H3K27me3
Rep.1
-1.702
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002451
(v2.0)		Ankrd4071452
273/1440.4076169/1440.11468/1442.4229152/1441.39387/144-2.153366/144-1.7021
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002451
(v2.0)		Ankrd4071452
44.452210343.16
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002451
(v2.0)		Ankrd4071452
12.2786618.6
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A