DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2002960
GeneAtp2c1
SynonymsATP2C1A
PMR1
SPCA
DescriptionATPase, Ca++-sequestering
LocusNM_001253831 UCSC: chr9:105313692-105423587(-) OLP: chr9:105313692-105423587(-)
NM_001253834 UCSC: chr9:105313692-105397463(-) OLP: chr9:105313692-105397463(-)
NM_175025 UCSC: chr9:105313692-105397463(-) OLP: chr9:105313692-105397463(-)
NM_001253836 UCSC: chr9:105325097-105397463(-) OLP: chr9:105325097-105397463(-)
DB links


Entrez 235574
MGI 1889008
Ensembl ENSMUSG00000032570
Vega OTTMUSG00000042223
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.156
SPR
2.191
Oo
2.223
1C
1.851
2C
1.414
4C
0.937
ESC
1.356
MEF
2.127
p1C
1.336
p4C
0.838
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002960
(v2.0)		Atp2c1NM_001253831,NM_001253834,NM_001253836,NM_175025235574
13.3108154.332166.19169.925424.94637.6580121.675132.86320.68515.88563
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.466
H3.3
Rep.1
0.449
H3.3
Rep.2
4.577
H3K4me3
Rep.1
3.836
H3K4me3
Rep.2
-0.531
H3K27me3
Rep.1
-0.381
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002960
(v2.0)		Atp2c1235574
763/3870.4655573/3870.449784/3874.57692210/3873.836264/387-0.5315450/387-0.3806
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.771
H3.3
Rep.1
0.623
H3.3
Rep.2
5.518
H3K4me3
Rep.1
4.686
H3K4me3
Rep.2
-1.928
H3K27me3
Rep.1
-1.012
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002960
(v2.0)		Atp2c1235574
454/1860.7714311/1860.6227747/1865.51761928/1864.686411/186-1.9283139/186-1.0117
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002960
(v2.0)		Atp2c1235574
68.231614547.06
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002960
(v2.0)		Atp2c1235574
17.74298919.94
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A