DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2003470
GeneBrca1
Synonyms
Descriptionbreast cancer 1
LocusNM_009764 UCSC: chr11:101350078-101413269(-) OLP: chr11:101350078-101413269(-)
DB links


Entrez 12189
MGI 104537
Ensembl ENSMUSG00000017146
Vega OTTMUSG00000002870
Featureprotein-coding
GO_BP
  •   43 Terms
GO_MF
GO_CC
KEGG
  •   1 Terms
      Ubiquitin mediated proteolysis (mmu04120)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003470
(v2.0)		Brca1NM_00976412189
1.8414548.298531.792517.536212.350419.190111.493421.534311.636414.5539
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2003470
(v2.0)		Brca112189
749/4090.3593600/4090.43571211/4095.12613586/4094.45524/409-1.9889121/409-2.342
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2003470
(v2.0)		Brca112189
355/1850.4255286/1850.511043/1856.00592622/1855.137412/185-1.805349/185-2.4799
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2003470
(v2.0)		Brca112189
43.717714330.57
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2003470
(v2.0)		Brca112189
10.02911059.55
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003588
(v1.0)		3864C0903H08-3Mm.1889Brca112189
U033456NAP001719-001Brca1;TC837904P48754U,F3.92233.75293.21533.30632.89473.12553.2561
0003588
(v1.0)		5073U35641.1Mm.1889Brca112189
U033456NAP001719-001Brca1;TC837904P48754U,F3.11843.06493.39193.28053.00143.08132.9694
MOE430 N/A
Agilent44K N/A
Proteome N/A