DBTMEE

DBTMEE:2003889

Gene

Cbx1

Synonyms

Cbx-rs2
HP1B
Hp1beta
M31
MOD1

Description

chromobox 1

Locus

NM_007622 UCSC: chr11:96650450-96669954(+) OLP: chr11:96650450-96669954(+)

DB links

Entrez 12412
MGI 105369
Ensembl ENSMUSG00000018666
Vega OTTMUSG00000001636

Feature

protein-coding

GO_BP

1 Terms

GO_MF

5 Terms

GO_CC

8 Terms

KEGG

Ver2_FPKM

Log10 (FPKM+1)

1.224

SPR

1.619

1.884

1.028

1.236

1.757

ESC

1.487

MEF

1.773

p1C

1.214

p4C

1.849

iPSC

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2003889 (v2.0)	Cbx1	NM_007622	12412	15.7323	40.6024	75.477	9.66556	16.2179	56.198	29.669	58.2406	15.378	69.6885

SPR_Histone_Erkek_5KaroundTSS

Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)

0.227

H3.3
Rep.1

0.133

H3.3
Rep.2

1.986

H3K4me3
Rep.1

1.1

H3K4me3
Rep.2

-0.996

H3K27me3
Rep.1

-0.96

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2003889 (v2.0)	Cbx1	12412	645/386	0.2273	459/386	0.1334	129/386	1.9863	330/386	1.1001	46/386	-0.9956	300/386	-0.9595

SPR_Histone_Erkek_2KaroundTSS

Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)

0.584

H3.3
Rep.1

0.286

H3.3
Rep.2

3.082

H3K4me3
Rep.1

2.174

H3K4me3
Rep.2

-1.113

H3K27me3
Rep.1

-1.032

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2003889 (v2.0)	Cbx1	12412	358/167	0.5844	221/167	0.2864	124/167	3.082	303/167	2.1739	18/167	-1.1135	123/167	-1.0315

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2003889 (v2.0)	Cbx1	12412	43.8911	131	33.5

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2003889 (v2.0)	Cbx1	12412	22.9433	99	23.18

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

NIA60mer

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0003997 (v1.0)	11520	H3117E07-3	Mm.29055	Cbx1	12412	U013257	NAP105226-1	Cbx1;	TC869268,TC869267,TC869266,TC869264	Q9CYJ8	U,F,2	4.1451	4.2768	3.5934	3.5917	3.6895	4.0917	4.3032

MOE430

N/A

Agilent44K

N/A

Proteome

N/A