DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2003898
GeneCc2d1a
SynonymsFreud-1
Tape
Descriptioncoiled-coil and C2 domain containing 1A
LocusNM_145970 UCSC: chr8:86656727-86671652(-) OLP: chr8:86656727-86671652(-)
DB links


Entrez 212139
MGI 2384831
Ensembl ENSMUSG00000036686
Vega OTTMUSG00000030574
Featureprotein-coding
GO_BP
  •   6 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      signal transduction (GO:0007165)
      positive regulation of I-kappaB kinase/NF-kappaB signaling (GO:0043123)
GO_MF
  •   4 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001078)
      DNA binding (GO:0003677)
      signal transducer activity (GO:0004871)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003898
(v2.0)		Cc2d1aNM_145970212139
20.365339.491446.28977.548415.8206110.30716.5532465.65918.991446.72696
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2003898
(v2.0)		Cc2d1a212139
842/5190.1849499/519-0.1725787/5194.17021939/5193.226635/519-1.8034280/519-1.4847
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2003898
(v2.0)		Cc2d1a212139
421/2210.4153242/2210.0147714/2215.21781683/2214.244710/221-2.2976104/221-1.6725
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2003898
(v2.0)		Cc2d1a212139
78.52114753.42
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2003898
(v2.0)		Cc2d1a212139
21.99928625.58
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A