DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2004994
GeneCops8
SynonymsCsn8
Sgn8
DescriptionCOP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
LocusNM_133805 UCSC: chr1:92500000-92509916(+) OLP: chr1:92500000-92509916(+)
DB links


Entrez 108679
MGI 1915363
Ensembl ENSMUSG00000034432
Featureprotein-coding
GO_BP
  •   3 Terms
      activation of NF-kappaB-inducing kinase activity (GO:0007250)
      negative regulation of cell proliferation (GO:0008285)
      cullin deneddylation (GO:0010388)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.348
SPR
2.048
Oo
2.133
1C
1.754
2C
1.751
4C
1.711
ESC
1.445
MEF
2.248
p1C
1.744
p4C
1.798
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004994
(v2.0)		Cops8NM_133805108679
21.2803110.811134.98355.703755.392950.394726.8448176.1454.422961.8004
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.03
H3.3
Rep.1
-0.166
H3.3
Rep.2
2.192
H3K4me3
Rep.1
0.91
H3K4me3
Rep.2
0.371
H3K27me3
Rep.1
0.309
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2004994
(v2.0)		Cops8108679
651/466-0.0304450/466-0.1662179/4662.1916349/4660.9105145/4660.3706875/4660.309
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.138
H3.3
Rep.1
0.044
H3.3
Rep.2
3.558
H3K4me3
Rep.1
2.259
H3K4me3
Rep.2
-1.222
H3K27me3
Rep.1
-0.492
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2004994
(v2.0)		Cops8108679
253/1610.1384180/1610.0445167/1613.5576310/1612.258816/161-1.2225173/161-0.492
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2004994
(v2.0)		Cops8108679
65.830813748.05
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2004994
(v2.0)		Cops8108679
21.27549123.38
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A