DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2005872
GeneDennd6a
SynonymsFam116a
DescriptionDENN/MADD domain containing 6A
LocusNM_001285467 UCSC: chr14:27393344-27453808(+) OLP: chr14:27393344-27453808(+)
NM_001285466 UCSC: chr14:27393344-27453808(+) OLP: chr14:27393344-27453808(+)
NM_145969 UCSC: chr14:27399036-27447895(+) OLP: chr14:27399036-27447895(+)
NM_001134465 UCSC: chr14:27399036-27453808(+) OLP: chr14:27399036-27453808(+)
DB links


Entrez 211922
MGI 2442980
Ensembl ENSMUSG00000040818
Featureprotein-coding
GO_BP
  •   2 Terms
      regulation of Rab GTPase activity (GO:0032313)
      positive regulation of cell-cell adhesion mediated by cadherin (GO:2000049)
GO_MF
  •   2 Terms
      guanyl-nucleotide exchange factor activity (GO:0005085)
      Rab guanyl-nucleotide exchange factor activity (GO:0017112)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.982
SPR
1.491
Oo
1.765
1C
1.33
2C
0.694
4C
0.752
ESC
0.772
MEF
1.742
p1C
0.638
p4C
0.697
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005872
(v2.0)		Dennd6aNM_001134465,NM_001285466,NM_001285467,NM_145969211922
8.5960829.94857.223620.36063.93884.643354.9145954.22883.3413.97575
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.232
H3.3
Rep.1
0.05
H3.3
Rep.2
1.406
H3K4me3
Rep.1
0.848
H3K4me3
Rep.2
-0.958
H3K27me3
Rep.1
-0.91
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005872
(v2.0)		Dennd6a211922
617/3680.2322413/3680.050182/3681.4057264/3680.847745/368-0.9584296/368-0.91
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.399
H3.3
Rep.1
0.103
H3.3
Rep.2
2.311
H3K4me3
Rep.1
1.72
H3K4me3
Rep.2
-2.014
H3K27me3
Rep.1
-1.889
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005872
(v2.0)		Dennd6a211922
309/1640.399191/1640.103171/1642.3105217/1641.71999/164-2.01466/164-1.8885
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A