DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2005877
GeneDepdc5
Synonyms
DescriptionDEP domain containing 5
LocusNM_177786 UCSC: chr5:33206370-33298949(+) OLP: chr5:33206370-33298949(+)
NM_001170567 UCSC: chr5:33206370-33336882(+) OLP: chr5:33206370-33336882(+)
NM_001025426 UCSC: chr5:33206370-33336882(+) OLP: chr5:33206370-33336882(+)
DB links


Entrez 277854
MGI 2141101
Ensembl ENSMUSG00000037426
Vega OTTMUSG00000028553
Featureprotein-coding
GO_BP
  •   1 Terms
GO_MF
  •   1 Terms
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.553
SPR
0.946
Oo
1.179
1C
1.437
2C
1.142
4C
0.568
ESC
1.087
MEF
1.139
p1C
1.046
p4C
0.492
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005877
(v2.0)		Depdc5NM_001025426,NM_001170567,NM_177786277854
2.576677.8333414.103326.354512.88072.7008311.204512.778810.10752.10685
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.117
H3.3
Rep.1
0.102
H3.3
Rep.2
1.776
H3K4me3
Rep.1
0.488
H3K4me3
Rep.2
-1.193
H3K27me3
Rep.1
-0.877
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005877
(v2.0)		Depdc5277854
568/3670.117427/3670.102106/3671.776205/3670.488338/367-1.1927302/367-0.8773
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.249
H3.3
Rep.1
0.053
H3.3
Rep.2
2.929
H3K4me3
Rep.1
1.652
H3K4me3
Rep.2
-1.644
H3K27me3
Rep.1
-1.439
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005877
(v2.0)		Depdc5277854
258/1520.249171/1520.0534102/1522.9288192/1521.652111/152-1.644284/152-1.4386
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005877
(v2.0)		Depdc5277854
35.54688044.43
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005877
(v2.0)		Depdc5277854
14.66755725.73
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A